Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq14274 150 3e-31 seq91636 145 1e-29 seq649457 118 2e-21 seq1231921 116 7e-21 seq1351965 100 5e-16 seq856667 98.7 2e-15 seq1405100 84.2 4e-11 >seq14274 Length=203 Score = 150 bits (166), Expect = 3e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || |||||||| || |||||||| ||||| || || || | Sbjct 1 AGGCGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGG 60 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || ||||| | || |||||||| || ||||| || Sbjct 61 CCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCGCTGCTGGTCGGGGGGGATGCCCTCT 120 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || ||||| ||||| ||| |||||||||||| | || ||||||| |||| Sbjct 121 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTG 180 Query 68424 ATGGTTTTTCCCGTGAGGGTCTT 68446 ||||| || || || |||||||| Sbjct 181 ATGGTCTTGCCGGTCAGGGTCTT 203 >seq91636 Length=227 Score = 145 bits (160), Expect = 1e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || |||||||| || |||||||| || ||||| || || | Sbjct 188 AGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 129 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || ||||| || || ||||| ||| Sbjct 128 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 69 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || |||||||||||||| |||||||||||| | || || |||| |||| Sbjct 68 TTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTG 9 Query 68424 ATGGTTTT 68431 ||||| || Sbjct 8 ATGGTCTT 1 >seq649457 Length=677 Score = 118 bits (130), Expect = 2e-21 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG--AGAGTGTCCTCCCATCTT 68310 |||| | |||| |||||||||| |||||||| |||| || ||| ||| ||||||| Sbjct 599 ACCAGGCGTAGGATGGACTCTTTCTGGATGTTGTAATAGGGAAGATTGTGG--CCATCTT 542 Query 68311 CTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTT 68370 | | |||||| || | || ||||| ||| ||||| || || ||||| || || || | Sbjct 541 CCAGCTGCTTGCCCACAAAGATGAGCTGTTGATGGTCCGGAGGGATGCCCTCTTTATCCT 482 Query 68371 GAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTT 68430 | ||||| || ||||| ||||||||||| | ||||||||| | | ||||||| | Sbjct 481 GGATCTTGGCATTGACATTTTCGATGGTGTCACTGGGTTCTACTTCTAGGATGATGGTCT 422 Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | | | |||||||| | ||| ||||||| Sbjct 421 TGCTGATCAGGGTCTTCATGAAGGTCTGCAT 391 >seq1231921 Length=2451 Score = 116 bits (128), Expect = 7e-21 Identities = 161/224 (72%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 68238 CCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGT 68297 || |||||| | | ||| ||| | ||||||||||| |||||||| || || || || Sbjct 225 CCACGAAGGTGGAGCTCCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCCGATAGG 284 Query 68298 GTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATG 68357 | | ||||| || | |||||| || | ||||| || | | | ||||| ||||| ||| Sbjct 285 ATGCAACCATCCTCCAGCTGCTTGCCAACAAATATCAGCCCT-GCTGGTCAGGTGGGATG 343 Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||| | ||| ||||| ||||| || || ||||||||| | || || || Sbjct 344 CCTTCCTTATATTGGATCTTGGCCTTTACATTCTTGATGGTGTCACTGGGCTCAACCTCA 403 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||| || || || | |||||| || || |||||||| Sbjct 404 AGACTGATGGTCTTGCCTGTCATGGTCTTCACAAAGATCTGCAT 447 >seq1351965 Length=3703 Score = 100 bits (110), Expect = 5e-16 Identities = 162/231 (70%), Gaps = 19/231 (8%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| |||| ||| | ||| ||||||| |||||||| || || || Sbjct 2191 CCGCCACGAAGGCGGGGCACCAGGTGCATGGTGAACTCTTTCTGGATGTTGTAGTCCGAT 2132 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||| || | |||||| || || || || || || || ||||| ||||| Sbjct 2131 AGGGTGAGACTATCCTCCAGCTGCTTGCCAGCAAACATCAGCCTCTGCTGGTCAGGTGGG 2072 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| ||||| ||||| |||||| || ||| || || || Sbjct 2071 ATGCCTTCCTTATCTTGGATCTTGGCCTTG------TCACTGG-----GC----TCGACC 2027 Query 68415 TCCA-AG---GTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||||| || || || |||||||| ||||| |||||||| Sbjct 2026 TCAAGAGTGATTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 1976 >seq856667 Length=1038 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301 ||||| | | |||| ||| | ||||||||||| |||||||| || || | || || | Sbjct 976 GAAGGGGAAGCACCA-GTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCAACAGGGTGC 918 Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361 ||||| || | | |||| ||||| || || || || || ||| | ||||| |||||| Sbjct 917 AACCATCCTCCAGCGGCTTGCCGGCAAACATCAGCCTCTGCTGGGCAGGTGGGTTGCCTT 858 Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421 |||| ||||| ||||| ||||||| ||| || | || | | || || | | Sbjct 857 CCTTATCTTGGATCTTGACCTTGACATTCTCCATAGACTCACTGGGCTGGACCTCAAGTG 798 Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 ||||||| || ||| | |||||||| || || Sbjct 797 TGATGGTCTTGCCCATCAGGGTCTTCACAAA 767 >seq1405100 Length=4912 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 68265 GTGGACTCTTTTTGGATGTTATAATC--GGAGAGTGTCCTCCCATCTTCTAACTGCTTCC 68322 ||||||||||| |||||||| | || | ||| | | ||||| || | |||||| | Sbjct 4173 GTGGACTCTTTGTGGATGTTGCAGTCCTGCAGAAGG--CAGCCATCCTCCAGCTGCTTAC 4230 Query 68323 CGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCT 68382 ||| ||||| || || || | ||||||| | || || ||| |||||| ||||| |||| Sbjct 4231 TGGCAAATATCAGCCTCTGCTTGTCGGGTAGGGTGACTCCCTGGTCTTGGATCTTGGCCT 4290 Query 68383 TGACGGCCTCGATGGTGTC 68401 |||| ||| |||||||| Sbjct 4291 TGACATTCTCAATGGTGTC 4309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904778276044160