Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1304636 116 7e-21 seq1023260 93.3 8e-14 >seq1304636 Length=3081 Score = 116 bits (128), Expect = 7e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || |||||| | ||||| ||||| ||||||||||||||| |||| || || || |||||| Sbjct 1758 GTGGCCTTTGCTGCCGTGGAGGGGATCTTCTTCTCGGGCTCCTTTGCATCAATATTCTGG 1817 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 |||||| || || ||||||||| ||||||||||| || || || |||||||| || Sbjct 1818 CTCAAGAAGCGGGGACTGATGCCCGGCCTCACCTTCTCCAATGAGCTTATCAGCAGAGAT 1877 Query 42828 GAGG 42831 |||| Sbjct 1878 GAGG 1881 >seq1023260 Length=1473 Score = 93.3 bits (102), Expect = 8e-14 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| ||||| | ||||| || ||||| |||||||| || | || || | || |||| Sbjct 90 TGGTGGCCTTCGCTGCCGTAGAAGGCATTTTCTTCTCTGGGTCGTTTGCTGCTATATTCT 149 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| || ||||| |||||||| ||||| ||||| || ||||||||| Sbjct 150 GGCTGAAGAAGAGAGGCCTC-ATGCCAGGACTCACTTTCTCAAACGAGCTGATCAGCAGG 208 Query 42825 GACGA 42829 || || Sbjct 209 GATGA 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927079890177280