Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value seq1252348 96.9 4e-15 seq1108254 82.4 8e-11 >seq1252348 Length=2602 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||| | || ||||| || | || ||||||||||| || ||||||| |||||| | Sbjct 1101 AGGGTTACTTGGGTTGCCAAACCTTATCGGAAATGATCCAGTTTTACCTGGTGGAAGTGA 1042 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 |||| ||||| |||| ||| | ||| ||| ||| || ||| | || || |||| || | Sbjct 1041 TGCCCCAGGCAGAAAGCCATGGCCCAGAAATCAAGGAGCATTTGAACTCCCTGGGAGAGA 982 Query 9981 ATCTAAAGACCCT 9993 | || |||||||| Sbjct 981 AGCTGAAGACCCT 969 >seq1108254 Length=1785 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 10080 AGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACA 10139 |||| || || ||||| | ||||| ||||||| |||||| ||||| || || |||| || Sbjct 120 AGCTCCAAGAGAAAGGCGTCTACAAGGCCATGAATGAATTCGACATCTTCATCAACTGCA 179 Query 10140 TAGAAGCATACATGACAATTAAA 10162 |||||||||||||||| || ||| Sbjct 180 TAGAAGCATACATGACCATCAAA 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542615016133120