Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1406984 167 3e-36 seq1133617 104 3e-17 seq1337296 91.5 2e-13 seq1313077 86.0 9e-12 >seq1406984 Length=4975 Score = 167 bits (184), Expect = 3e-36 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || || || ||||||||||| ||| ||||| |||||||| | || || || | ||| Sbjct 1973 AAAGGGCAGCCCTTCACATTATTACAGATGAGAGACTGAATTGAGGCAGTGTTAATGATC 1914 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || ||||| || || ||||| || ||||||||| || || |||||| Sbjct 1913 TTAAAACCCACTTCCCCTCCAAAAGTGCTTGGCTTCCAGTACTGAGGAGAACAGATGGGA 1854 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || ||||| || || | ||| |||| || ||| Sbjct 1853 TTACCCATAAGTCCTTTCAAGGAGAATGGCGCCCCAAGTTCTACCATGGTCTCCCCAAAG 1794 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||| | ||||| || ||||| || | | | ||| || || || | || |||| | Sbjct 1793 ATAGCATCAGGACGAGGCTTTTCCACCAGCAGGGCAGGATACAGCTCCATGGCATCGATG 1734 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | |||||||||| |||||| ||||| || || ||||| ||| Sbjct 1733 TCACTGTAGAGGGCTTTCAACTCTGCAGCCATTTCTTTCTCTCCT 1689 >seq1133617 Length=1896 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| ||||| | ||||||||| | ||| ||| | || Sbjct 1050 TCTTACCCCATGGCCCAGTCCTCGGGTGAAGCCAGGTCCTCGCTTCTGATCTGTCTTGAA 991 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| || | |||||||||||| Sbjct 990 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTCGAGCCCTGGGGATC 931 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || || || | |||| | || |||||| |||| || | | ||||||| || || Sbjct 930 AGGAATGAACTTTCTCCTTAAAAGAACTTTTTCCAGAACTTCTTTTGAATCAGGAAG 874 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| ||||||||| || || || || || | ||| || Sbjct 357 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCCACAGGCGGAAGGGCTCTGGTG 298 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || || || || || || || ||||||||| | ||||| ||||| | | ||||| Sbjct 297 TAGTATGAGAGGTTGGAGAAGGCTTCCCAGTTTTTGTAACCATAGTGCACATTGTAAGTT 238 Query 10507 GGGGGACTGTCAATCA 10522 || ||||||||||||| Sbjct 237 GGTGGACTGTCAATCA 222 >seq1337296 Length=3481 Score = 91.5 bits (100), Expect = 2e-13 Identities = 166/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || | ||| ||||| || || || || || |||||||| ||||| || | Sbjct 2231 GCTGTGTTGACAAGGTCGAAACCCACATCACCACCAAATGTGCTGGGCTTCCAATATTCT 2290 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 || || || ||| || | | ||| || || | |||||| |||||||| | ||| || Sbjct 2291 GGAGAACAAATGGGATTTCCTAGGAGACCCTTAAGGGAAAAAGGAGCCCCAATCTCTATC 2350 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || ||||| || || |||| ||| | ||||| | | | || | |||| Sbjct 2351 ATACTCTCCCCAAAAATGGAGTTGGGCTGGCACTTTTCCAGCAGCAGCCCTGGATAGAAC 2410 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||| |||| ||| || || || | |||||||| || || ||||||||||| ||| Sbjct 2411 TCTAAAGCATCGATGTCACCGTATAGCTCCTCCAACTCAGCGGCCATCTCCTTCTCTCCT 2470 Query 9176 ACA 9178 || Sbjct 2471 GCA 2473 >seq1313077 Length=3175 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 9568 TGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAAGGCGGTA 9627 |||||| | ||||| |||||||| | || || || || |||||||| || | Sbjct 2650 TGCCAGTGATAGAGATGGTTGAACTCCACAGCAATGCGATTGTGGTACTGGAACTGAGCT 2709 Query 9628 CCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACA 9687 | |||||| | |||||||||||| | ||||| | | ||| || || | ||||| ||| Sbjct 2710 CGGAACAGCAGCTCCGGGTCAAACTTGAGCTGTAGGAAGTAACCACTCAAGTGCTGCACA 2769 Query 9688 TACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 |||| | ||| ||||| || ||||||||||| || Sbjct 2770 TACTCTTCGATGATAATTTTGATGGTTTCCCCTGT 2804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710500712835200