Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq14274 131 4e-25 seq91636 109 1e-18 seq1269963 93.3 1e-13 seq686906 91.5 3e-13 seq1262044 89.7 1e-12 >seq14274 Length=203 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| |||| |||||| |||| | ||| | |||||| Sbjct 7 AGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 66 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| ||||||||||| || || || ||| ||| Sbjct 67 TCCAGCTGCTTGCCCGCAAAGATGAGCCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCC 126 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| |||||| | | || || |||| ||||| ||| Sbjct 127 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTC 186 Query 199598 TTACCCGTGAGAGTTTT 199614 || || || || || || Sbjct 187 TTGCCGGTCAGGGTCTT 203 >seq91636 Length=227 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || |||||||| |||| ||||||||| | || || | ||||| Sbjct 183 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 124 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || || || || || Sbjct 123 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 64 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| |||||| ||| || |||| |||||| | | || || |||| ||||| || Sbjct 63 CTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGT 4 Query 199597 CTT 199599 ||| Sbjct 3 CTT 1 >seq1269963 Length=2748 Score = 93.3 bits (102), Expect = 1e-13 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 199430 AGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTT 199489 || || | || |||||| | |||||||| || |||||| |||||||||||||| |||| Sbjct 454 AGGGTGGGCTTCTTTTGAATGTTGTAGTAAGACAAAGTACTTCCATCTTCCAGATGCTCA 513 Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT-CTCGCTCCTGAATCTTTTG 199548 || || |||| || | |||||| | ||| ||||||||| |||| | ||| ||||| Sbjct 514 CCAGCAAAGAGCAGCCTCTGCTGAGCAGGAGAAATTCCTTCCTCG-TGCTGGATCTTGGC 572 Query 199549 CTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAG 199608 ||| || || | | |||| | ||| || | | ||||| || || ||| | || Sbjct 573 CTTTACATTCTCTATAGCATCTGGGGGTTCAACCTTGAGTGTGATAGTTTTCCCCATAAG 632 Query 199609 AGTTTTCACAAAAAT 199623 || ||||| ||||| Sbjct 633 GGTCTTCACGAAAAT 647 >seq686906 Length=732 Score = 91.5 bits (100), Expect = 3e-13 Identities = 102/137 (74%), Gaps = 7/137 (5%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| ||||| | || || || |||||||| | |||||| |||| |||||| Sbjct 197 CGAAGTCTCAACACAAGATTAAGGGTGGATTCCTTTTGAATGTTGTACTCAGACAAAGTA 256 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| ||||| || || || | ||||||||| ||| ||||||| Sbjct 257 CCGCCATCTTCCAGTTGCTTACC-------ATCAGCCTCTGCTGGTCAGGAGGAATTCCT 309 Query 199529 TCTCGCTCCTGAATCTT 199545 || ||||| ||||| Sbjct 310 TCCTTATCCTGGATCTT 326 >seq1262044 Length=2680 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||| | ||||||||||| |||||| | ||||||||||| ||||| || || |||| Sbjct 1662 CCTTTTGAATGTTGTAGTCAGACAAAGTTCGGCCATCTTCCAGTTGCTTACCAGCAAAGA 1603 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || | ||||||||| ||| ||||||| Sbjct 1602 TCAGCCTCTGCTGGTCAGGAGGAATTCCT 1574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1156836254522576