Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq91636 109 6e-19 seq14274 107 2e-18 seq1231921 91.5 2e-13 >seq91636 Length=227 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||| || |||||| ||||| ||||||||||| || ||||| | Sbjct 185 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 126 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| | ||||||||| | || | || ||||||| Sbjct 125 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 66 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| || | | ||||| || | || || |||| |||||| Sbjct 65 TCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATG 6 Query 46559 GTTTT 46563 || || Sbjct 5 GTCTT 1 >seq14274 Length=203 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || |||||||| | || || ||||||||||| || || Sbjct 27 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAA 86 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | || ||| || ||| |||||| ||| | | Sbjct 87 GATGAGCCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTT 146 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| || | ||||| |||| |||||||| ||||| ||||| || || Sbjct 147 CTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTT 203 >seq1231921 Length=2451 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 46386 CCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGA 46445 |||| ||||| || ||| || ||||| |||||||| ||||| ||| | || || | Sbjct 241 CCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCCGATAGGATGCAACCATCCTCCA 300 Query 46446 GCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGA 46505 |||||||||| | |||||| ||| ||||||||| | || | || ||||| | || Sbjct 301 GCTGCTTGCCAACAAATATC-AGCCCTGCTGGTCAGGTGGGATGCCTTCCTTATATTGGA 359 Query 46506 TCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGC 46565 |||| ||| | || | ||||| || | || || || | ||||||| |||| Sbjct 360 TCTTGGCCTTTACATTCTTGATGGTGTCACTGGGCTCAACCTCAAGACTGATGGTCTTGC 419 Query 46566 CCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | |||| || || |||||||| ||||| ||| Sbjct 420 CTGTCATGGTCTTCACAAAGATCTGCATATTG 451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554907763858560