Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq91636 113 4e-20 seq14274 113 4e-20 >seq91636 Length=227 Score = 113 bits (124), Expect = 4e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 38274 AAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATC 38333 || ||||||||| | || |||||| ||| |||| | | | | | || | ||| ||| Sbjct 1 AAGACCATCACCCTGGAGGTCGAGCCCAGTGACACCATCGAGAATGTCAAGGCAAAGATC 60 Query 38334 CTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTG 38393 | ||||| ||||| || ||| | ||||| ||| |||| || | || ||||| |||||| Sbjct 61 CAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTG 120 Query 38394 GACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTG 38453 || || | |||||||| ||||||||||||||| ||||| | || ||||| |||| Sbjct 121 GAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTC 180 Query 38454 CTGCG 38458 ||||| Sbjct 181 CTGCG 185 >seq14274 Length=203 Score = 113 bits (124), Expect = 4e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 38259 AAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AAC 38317 || || || || ||||| ||||||||| | || || ||| ||| |||| | | | ||| Sbjct 203 AAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAGAAC 144 Query 38318 GCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTA 38377 | | || | || |||| || |||||||| || ||| ||||||| ||||||||||| | Sbjct 143 G-TGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGACCAGCAGCGGCTCATCTT 85 Query 38378 CGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGC 38437 |||||||| |||||||| || | ||||| || || ||||||||||| ||||| | Sbjct 84 TGCGGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAGGAGTC 25 Query 38438 GACGCTGCATTTGGTGCTGCG 38458 || || || |||| || || Sbjct 24 CACCCTCCACCTGGTTCTCCG 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 491031341803520