Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1129844 109 2e-18 seq828480 107 7e-18 seq968272 104 9e-17 seq534211 102 3e-16 seq1310571 100 1e-15 seq1448295 87.8 7e-12 >seq1129844 Length=1879 Score = 109 bits (120), Expect = 2e-18 Identities = 355/544 (65%), Gaps = 28/544 (5%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| |||| ||||||||||| ||||||| || || || ||||||| ||| ||||||| Sbjct 1188 GCACTTGGTATTGATCTTGGCACCACCTACTCCTGCGTGGGTGTTTTCCAGCATGGAAAG 1129 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || | || || || |||||||| | | | |||| | || | || |||||| Sbjct 1128 GTGAAGATAATTGCTAATGACCAGGTAACG-GAACCATGCCAAGGTATGTTGCTTTTACT 1070 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTA--AATTCAAATGCCAA 451089 || ||||| || | | ||| | |||| || |||| ||| ||| || ||| Sbjct 1069 GACACAGAACGATTAATTGGGGATTCTGCAAAGAATCA--GGTTGCAATG--AACCCCAC 1014 Query 451090 AAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACA 451149 |||||||| | | || ||| || | || | | || || |||||||| | || || Sbjct 1013 GAACACAGTTTTTAATAACAAATGTCTGATCTGGCATAGGTTTGATGATGTT---GTTCA 957 Query 451150 AAAAGAGAAAAAATTCTTTTCTTATGATG-TAGTAAATCAAAAAGGAAAGCCCTATATTC 451208 | || | || || || | | ||| | || || | ||| | |||| | | | Sbjct 956 GACTGACATGAAGCACTGGTCCT-TCATGGTGGTGAACAATGGAGGCAGGCCCAAGGTCC 898 Query 451209 AAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTC 451268 ||||| | || || || || | |||| ||| || ||||| | || |||||| | | Sbjct 897 AAGTAGAATACAAGGGAGAGGCAAAAAGTTTCTACCCAGAAGAGGTGTCCTCTATGATCC 838 Query 451269 TTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAA 451328 | || ||||| |||| |||||| ||| ||| | | ||||| ||| | | Sbjct 837 T----AAGATGAAGGAAATCGCAGAAGCCTATCTTGAGAATTCTATTACTAATGTTGCAT 782 Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388 | ||| | ||||||| | | || | | ||||| |||||||||||| | Sbjct 781 TCACT----------ACTTCAATGGTTCTCAGTGATAGGCAACAAAAGATGCAGGAACCA 732 Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATG 451448 ||||||| | ||||| ||||||||||| |||||||| || || |||||| | || |||| Sbjct 731 TTGCTGGCCTCAATGTGCTTCGAATTATCAATGAACCCACTGCTGCTGCTATTGCTTATG 672 Query 451449 GACT 451452 | || Sbjct 671 GGCT 668 >seq828480 Length=979 Score = 107 bits (118), Expect = 7e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 451256 TCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTT 451315 || ||||| ||||| | ||| ||||| |||| | |||| ||| |||| | ||| Sbjct 853 TCCTCTATTGTTCTGATTAAGATGAAGGAAATTGTAGAAGCCTATCTTGGGAAGGCTGTT 794 Query 451316 ACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAA 451375 ||| ||| || | || || || || || ||||||||| | || | | ||||| ||| Sbjct 793 ACTAATGTTGTGGTCACAGTACCAGCCTACTTCAATGATTCTCAGCAACGGGCAACAAAA 734 Query 451376 GATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCT 451435 ||||||||| |||||||| | |||| ||||||||||| |||||||| || || ||| Sbjct 733 GATGCAGGAACCATTGCTGGCCTCAATGAGCTTCGAATTATCAATGAACCAACTGCTGCT 674 Query 451436 GCTCTAGCATATGG 451449 ||| | | ||||| Sbjct 673 GCTATTCCTTATGG 660 >seq968272 Length=1310 Score = 104 bits (114), Expect = 9e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| || | || || || || || ||||| ||| | || || || ||||| Sbjct 198 GTTACTAATGCTGTGGTCACAGTGCCAGCCTACTTCAACGATTCTCAGCGACAGGCAACA 257 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| |||||||| | ||||| ||||||||||| |||||||| || || Sbjct 258 AAAGATGCCGGAACCATTGCTGGCCTCAATGTGCTTCGAATTATCAATGAACCAACTGCT 317 Query 451433 GCTGCTCTAGCATATGG 451449 |||||| | || ||||| Sbjct 318 GCTGCTATTGCTTATGG 334 >seq534211 Length=531 Score = 102 bits (112), Expect = 3e-16 Identities = 247/370 (67%), Gaps = 3/370 (1%) Strand=Plus/Plus Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA 451150 ||||| || | |||||| |||||| | |||||| | | || | ||||| | |||||| Sbjct 84 AACACTGTTTTTGATGCCAAACGTCTGATTGGCAGGAAGTTTAATGATCCTGTTGTACAG 143 Query 451151 AAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAA 451210 ||| | || | | | | | | || | || || || |||||| | | | Sbjct 144 TCAGACATGAAGCTTTGGCCATTTCAAGTGATTAACGAAGCGGGTAAGCCCAAGGTGCTG 203 Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 || ||||||||| || | ||| | || ||||| || || || || ||||| || Sbjct 204 GTGTCTTATAAAGGGGAGAAGAAAGCCTTCTACCCTGAGGAGATCTCGTCCATGGTGCTG 263 Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA-GTTACTGATGCAGTAAT 451329 || || ||||| || || |||||| | | | || | | | || || |||| || || Sbjct 264 ACGAAGATGAAGGAGACTGCAGAAGCTTTTCTGGGC-CACAATGTCACCAATGCTGTGAT 322 Query 451330 TACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATAT 451389 || || ||||| || |||||||| | ||||| || || || ||||||||||| ||| Sbjct 323 CACAGTGCCCGCCTACTTCAATGACTCTCAACGCCAGGCCACCAAAGATGCAGGTGTTAT 382 Query 451390 TGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 ||||| | ||||| || |||| || || || || ||||| || || | || ||||| Sbjct 383 CGCTGGACTCAATGTGCTGAGAATCATCAACGAGCCCACAGCTGCCGCCATTGCCTATGG 442 Query 451450 ACTAGGAAAA 451459 || ||| || Sbjct 443 -CTTGGATAA 451 >seq1310571 Length=3147 Score = 100 bits (110), Expect = 1e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| ||||||| |||||||| ||||||||||| |||||||||||||| Sbjct 621 GTTACACATGCAGTTGTTACTGTACCCGCTTACTTCAATGATGCCCAACGGCAAGCAACC 680 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| || |||||||| | ||||| | || || || ||||| || Sbjct 681 AAAGATGCTGGCACCATTGCTGGACTGAATGTCATGCGGATCATCAATGAGCC 733 Score = 86.0 bits (94), Expect = 2e-11 Identities = 88/113 (78%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 451196 AAGCCCTATATTCAAGTAAATTATAAAGGTG---AAACTAAAACTTTTGCTCCTGAAGAA 451252 ||||| || |||||||| || | ||||| |||| || ||||| || || |||||| Sbjct 278 AAGCCATACATTCAAGTTGATATTGGAGGTGGGCAAACCAAGACTTTCGCCCCAGAAGAA 337 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGG 451305 ||||| | |||||||| ||||||||||||||||| || ||| |||| |||| Sbjct 338 ATTTCTGCCATGGTTCTCACTAAAATGAAAGAAACTGCTGAAGCATAT-TTGG 389 Score = 84.2 bits (92), Expect = 8e-11 Identities = 127/178 (71%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 451426 TACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTAT 451485 ||||||||||||| | |||||||| || | || || ||| | || || || || || Sbjct 829 TACAGCAGCTGCTATTGCATATGGCCTGG----AT-AAGAGAGAGGGA-GAGAAGAACAT 882 Query 451486 TTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGG 451545 | || ||||| | ||||| ||||| |||| ||| | || | ||||| |||| Sbjct 883 CCTTGTGTTTGACCTGGGTGGTGGAACCTTTGATGTGTCTCTTCTGACCATTGACAATGG 942 Query 451546 GGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 || |||||||| ||| || ||||| ||||||||||| || || ||||| ||||| Sbjct 943 TGTCTTTGAAGTGGTGGCCACTAATGGAGATACTCATCTCGGTGGGGAAGACTTTGAT 1000 >seq1448295 Length=7764 Score = 87.8 bits (96), Expect = 7e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 127419 ATATGCTTCCGAAATTTCTTTAAATTTTTGTTCAGCTTCTTGTTTGTTATTTTGATTCTT 127478 |||||| || | | |||||| |||||| | || ||||| | |||||| | | |||| || Sbjct 4550 ATATGCCTCAGCGACTTCTTTGAATTTTCGCTCTGCTTCCTCTTTGTTTTCTGGATTTTT 4491 Query 127479 ATCAGGATGATGTTTAACAGCTAATTTACGGTAAGCTTTTTTAATTTC 127526 ||||||||| ||||| || | ||||||||||||| ||||||| || Sbjct 4490 ATCAGGATGCCATTTAAGTGCCACTTTACGGTAAGCTCTTTTAATGTC 4443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1938706249717824