Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1129844 145 6e-29 seq828480 122 6e-22 seq968272 116 3e-20 seq534211 111 1e-18 seq1357177 95.1 9e-14 seq539048 89.7 4e-12 seq1343236 86.0 5e-11 >seq1129844 Length=1879 Score = 145 bits (160), Expect = 6e-29 Identities = 779/1221 (64%), Gaps = 63/1221 (5%) Strand=Plus/Plus Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC--AAT----ATTTTGAAGT 517567 ||||| | |||||| ||||||||||||||||| | || | ||| || ||| | Sbjct 1 GTTTCAATACCAAGGGAAAGAGGAGTGACATCCAAGAGCAGCAAATCCTAATCCTGA--T 58 Query 517568 TTTTCATCAGT-TTGAC--CAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 517624 | ||| |||| ||| | || ||||| | ||| || | ||| |||||||| |||||| Sbjct 59 TGTTC-TCAGACTTGTCTCCAGATAGAATGGTTGCCTGCACAGCTGCACCATAAGCAACA 117 Query 517625 GCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGT 517684 | |||||| || |||||| | | ||| |||| ||| |||||||| || | || || Sbjct 118 GTTTCATCTGGGTTAACACTCTTATTCAGTTCTTTTCCATTGAAGAAGCCTTGCAGGAGC 177 Query 517685 TGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGA 517743 | ||| | ||| || || | || || || ||||| | ||||| ||||| | |||| | Sbjct 178 T-TCTGAATCTTGGGGATTCTAGTAGAACCGCCAACCAGGACAATGTCATGAATCTGTAA 236 Query 517744 TTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAA 517803 || || || || | ||| | ||||| || | || || |||||||||| Sbjct 237 CTTGTCTAGCTTAGCATCTCGAAGGGTCTTTTCTACAAGATCCAGGATGCCTCTAAACAA 296 Query 517804 GTCTGAACAAAGTTCTTCGAATTTAGC-----TCTAGTAAGAGTGACATTATAATCAATT 517858 ||| | | | ||||| |||| ||| | ||| || || | | |||| ||| Sbjct 297 GTCAGCATTTAATTCTTGGAATCGAGCATTGGTATAGAAATAGAGGTGTAGAAATCGATT 356 Query 517859 CCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTA 517918 | || | |||||||| |||| | || || || || || |||| || Sbjct 357 TCCTC----ATAGAATCAATCACAATACTGGTCTGGGTGCTGGAGGAAAGTGTGTACTTT 412 Query 517919 GCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCTGATTGATTCAAATC 517974 || ||||||| || || || | | | | ||| | || | |||| || Sbjct 413 GCCGGTTCACAGGCAGTATGCAGATTCCTGACAGATCTCTTGTTCTCACTGATG----TC 468 Query 517975 TGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAA 518032 | || | ||| ||| || || ||| | ||| | || | | |||||||| Sbjct 469 CTTCTTGTGCTTTTGCTTAAACTCAGCAAGGAA--ATGGTTGACCATTCTGTTATCAAAG 526 Query 518033 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 518092 ||||| || | || | |||||||| | || | | |||| |||| | ||| ||| Sbjct 527 TCTTCTCCACTAAAGTGGGTATTTCCAGCTGTTAATTTGACTTCAAAAATTTCATTCTCA 586 Query 518093 AGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 518152 | || | | | |||||| | ||| | |||| |||||||| || |||||| || Sbjct 587 ATAGTGAGGATTGACACATCAAACATACCAACTCCCAAGTCAAAAATGAGCACATTCCTT 646 Query 518153 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 518212 || | || |||||||| ||||| |||| |||||||||||| |||||||| ||| Sbjct 647 TCAGCACCAACCTTCTTATCAAGCCCATAAGCAATAGCAGCAGCAGTGGGTTCATTGATA 706 Query 518213 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 518272 |||| | ||||| || |||||||| ||||||||||||| || || | || || ||| Sbjct 707 ATTCGAAGCACATTGAGGCCAGCAATGGTTCCTGCATCTTTTGTTGCCTATCACTGAGAA 766 Query 518273 TCGTTAAAATA-TGCA-GGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAG 518330 | || || || || | | |||| || ||| | | |||| ||| ||| | Sbjct 767 CCATTGAAGTAGTGAATGCAACATTAGTAATAG--------AATTCT----CAAGATAGG 814 Query 518331 CGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGA-ATAT 518389 | ||| ||| ||||| |||| ||||| || || | | ||||||| | | | Sbjct 815 CTTCTGCGATTTCCTTCAT----CTTAGGATCATAGAGGACACCTCTTCTGGGTAGAAAC 870 Query 518390 TGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACT 518449 | ||| | ||| ||| ||||| | | || | ||| || | || Sbjct 871 TTTTTGCCTCTCCCTTG-TATTCTACTTGGACCTTGGGCCTGCCTCCATTGTTCACCACC 929 Query 518450 TTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA-AT 518508 | || | ||||| ||||| || | |||||| ||| | ||| || | ||| || Sbjct 930 ATGAAGGACCAGTGCTTCATGTCAGTCTGAACA---ACATCA-TCAAACCTATGCCAGAT 985 Query 518509 TAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGC 518568 | | ||| || ||||| || || || || || |||||| | |||| || || | Sbjct 986 CAGACATTTGTTATTAAAAACTGTGTTCGTGGGGTTCATTGCAACCTGATTCTTTGCAGA 1045 Query 518569 ATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACC 518628 ||| ||||| | ||||||| || ||||| | |||||| ||| | || | ||||| Sbjct 1046 ATCCCCAATTAATCGTTCTGTGTCAGTAAAAGCAACATACCTTGGCATGGTTCCGTTACC 1105 Query 518629 TTGATCATTCGCAATAAT-TTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 518687 || ||||| ||||| || |||| |||| |||| || | ||||| || || | | Sbjct 1106 -TGGTCATTAGCAATTATCTTCACCTTT-CCATGCTGGAAAACACCCACGCAGGAGTAGG 1163 Query 518688 TTGTTCCTAAATCAATACCAA 518708 | || || | ||||||||||| Sbjct 1164 TGGTGCCAAGATCAATACCAA 1184 >seq828480 Length=979 Score = 122 bits (134), Expect = 6e-22 Identities = 531/833 (64%), Gaps = 28/833 (3%) Strand=Plus/Plus Query 517508 CCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGT 517567 || || ||||| | |||||| ||||||||||||||||| | || | | || |||| Sbjct 1 CCAGCAGTTTCAATACCAAGGGAAAGAGGAGTGACATCCAAGAGCAGCACATCCTGAACA 60 Query 517568 TTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCT 517627 || ||| | | ||| |||| | || || | || |||||||| ||||||||| Sbjct 61 TTCTCAGACTTGTCTCCAGATGGAATGCCCGCCTGGACAGTTGCACCATAAGCAACAGCT 120 Query 517628 TCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGT 517687 |||| || |||| | | ||| |||| ||| |||||||| || | | ||||| Sbjct 121 TCATTGGG-TTAATGCTCTTATTCAGTTCTTTTCCATTGAAGAAGTCTTGCAGAAG---- 175 Query 517688 CTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 517747 |||| ||| | | || || | ||| | ||||| ||||| | |||||| || Sbjct 176 ----CCTTC--AATTCTGGTAGAACCACTAACCAGGACAATGTCATGGATCTGTGACTTG 229 Query 517748 TCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCT 517807 || ||||| || || || | ||||| || || || || |||| |||||||| Sbjct 230 TCTAGTTTAGAGTCTCATTGGGCCTTTTCTACAGGGTCCAGGGTGTCTCTGAACAAGTCC 289 Query 517808 GAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAAC 517867 | | | ||||| |||| ||| | ||| | | || |||| ||||| | | | Sbjct 290 GCATTTAATTCTTTGAATCAAGCACAGATAATGGAGGTATAGAAATCGATTCCCTTGTAG 349 Query 517868 AAAGAATCAACTTCAATCGTAGTTTGAGTC--GAAGAAGATAGTGCACGTTTAGCACGTT 517925 | | ||| || ||| | | | || || |||| ||| ||||| || || | || Sbjct 350 AGAAAATTAATCTCAGTACTGGCCTGGGTGCTGAAGGAGAAGATGCACTTT--GCCCATT 407 Query 517926 CACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTGATTGATTCAAATCTGTTTTA 517981 |||| || | ||| | | ||| | | || |||| || | || Sbjct 408 CACAGGCAATATGTAGATACCTGACAGCTCTCTTGTTCTCGCTGATG----TCCTTCTTG 463 Query 517982 TATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCAC 518039 | |||| ||| || || ||| | ||| | || | | |||||||| ||||| | Sbjct 464 TGCTTTCACTTAAACTCAGCAATGAA--ATGGTTGACCATTCTTTTATCAAAGTCTTCTC 521 Query 518040 CTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACA 518099 | ||| | | | ||| | || | | | |||| ||| |||||| || | || | Sbjct 522 CATGCAAGTGGTTGTCTCCAGCTGTTGATTTGACTTCAAAATTTCCATCCTCGATAGTGA 581 Query 518100 AAAGAGTTACATCATGGGTTCCACCACC-CATATCAAAAATAAGTACATTCATTTCTTTG 518158 | | |||||| || ||||| || || | |||||| || |||||| |||| | Sbjct 582 GGATTGACACATCAAAAGTACCACCCCCACAAGTAAAAAATCAGCACATTCCTTTCAGCG 641 Query 518159 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 518218 | || |||| | ||||| | || ||||||||||||||||||||| ||||||| Sbjct 642 CCAGCCTTCCTATCTATCCCATAAGGAATAGCAGCAGCAGTTGGTTCATTGATAATTCGA 701 Query 518219 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 518278 | |||| || |||||||| ||||||||||||| || || || || ||||| || Sbjct 702 AGCTCATTGAGGCCAGCAATGGTTCCTGCATCTTTTGTTGCCCGTTGCTGAGAATCATTG 761 Query 518279 AAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGC 518331 || || || || || || | || ||| ||| || | || |||| ||| || Sbjct 762 AAGTAGGCTGGTACTGTGACCACAACATTAGTAACAGCCTTCCCAAGATAGGC 814 >seq968272 Length=1310 Score = 116 bits (128), Expect = 3e-20 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || ||||| | ||||| |||| ||||||||||||||||||||| ||||||| | ||| Sbjct 346 TTCTTATCTAACCCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATAATTCGAAGCACA 287 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| |||| |||||||| || || |||| || |||||||| || || Sbjct 286 TTGAGGCCAGCAATGGTTCCGGCATCTTTTGTTGCCTGTCGCTGAGAATCGTTGAAGTAG 227 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 || || || || | || |||| ||| || Sbjct 226 GCTGGCACTGTGACCACAGCATTAGTAAC 198 >seq534211 Length=531 Score = 111 bits (122), Expect = 1e-18 Identities = 286/433 (66%), Gaps = 2/433 (0%) Strand=Plus/Minus Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 |||||| | ||||| |||| || ||||| || || || || || ||||||| ||||| Sbjct 452 TTTATCCAAGCCATAGGCAATGGCGGCAGCTGTGGGCTCGTTGATGATTCTCAGCACATT 393 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 || ||||| || ||||||||||| ||||| || | ||| || || || || || || Sbjct 392 GAGTCCAGCGATAACACCTGCATCTTTGGTGGCCTGGCGTTGAGAGTCATTGAAGTAGGC 333 Query 518287 AGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTT 518346 || || || || || |||| || || | | || | | |||| ||| || | || Sbjct 332 GGGCACTGTGATCACAGCATTGGTGACATTGTGGCCCAGAAAAGCTTCTGCAGTCTCCTT 273 Query 518347 CATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGAT-TCATTTT 518405 ||| || | | | ||| || || || | || ||| | | |||| | || || Sbjct 272 CATCTTCGTCAGCACCATGGACGAGATCTCCTC-AGGGTAGAAGGCTTTCTTCTCCCCTT 214 Query 518406 GATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATT 518465 ||| || || | | || ||| | | ||||| |||| ||||||||| | Sbjct 213 TATAAGACACCAGCACCTTGGGCTTACCCGCTTCGTTAATCACTTGAAATGGCCAAAGCT 154 Query 518466 TCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAA 518525 |||| ||||| || ||| | |||||||| | || ||||| | ||||| ||||||| Sbjct 153 TCATGTCTGACTGTACAACAGGATCATTAAACTTCCTGCCAATCAGACGTTTGGCATCAA 94 Query 518526 AAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT 518585 ||| ||| || || || || || | || | ||||| |||||||| ||||| | | Sbjct 93 AAACAGTGTTCTGGGGGTTCATGGCCACCTGGTTCTTGGCCGCATCTCCGATCAGCCGCT 34 Query 518586 CTGTCTCTGTAAA 518598 | || || || || Sbjct 33 CGGTGTCGGTGAA 21 >seq1357177 Length=3790 Score = 95.1 bits (104), Expect = 9e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| ||||| || ||||| ||||| ||||| ||||||||| | || || | ||||| Sbjct 405 TGTTGTAGCTACTATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTTAT 346 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| |||| ||| | || ||| ||||| || ||||| |||||||| || || Sbjct 345 TCATTATGGCACTCCTAAGGAAATGGAATCCTATTACCAGGAAATCGGTAGAGCTGGCCG 286 Query 367113 TGATGGA 367119 |||||| Sbjct 285 CGATGGA 279 >seq539048 Length=537 Score = 89.7 bits (98), Expect = 4e-12 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 518525 AAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 518584 |||| || || || || || |||||| | |||| || || ||||| ||||| | || Sbjct 201 AAAACTGTGTTCGTGGGGTTCATTGCAACCTGATTCTTTGCAGCATCCCCAATTAATCGT 142 Query 518585 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 518644 ||||| || ||||| | |||||| ||| || || || ||||| || ||||| ||||| Sbjct 141 TCTGTGTCAGTAAAAGCAACATAGCTTGGCGTGGTCCGGTTACCCTGGTCATTAGCAATT 82 Query 518645 ATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATA 518704 || || || || |||| || | ||||| || || | || || || | ||||||| Sbjct 81 ATCTCCACCTTTCCATGCTGGAAGACACCCACGCAGGAGTAGGTGGTGCCAAGATCAATA 22 Query 518705 CCAA 518708 |||| Sbjct 21 CCAA 18 >seq1343236 Length=3568 Score = 86.0 bits (94), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 635439 AATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTA 635498 ||||||| || || |||| |||||||| ||||| ||||| | || | || || ||| Sbjct 1751 AATGTACACTTATCCTGACTGAGGGAGACTCAGCCAAAACTCTGGCAGTTTCAGGCCTTG 1810 Query 635499 ATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTA 635558 ||| ||||||||||| | ||||| || || || |||||||||||| | | ||||| Sbjct 1811 GTGTAGTTGGAAGAGATAAATATGGGGTATTTCCTCTTAGAGGAAAAATACTCAATGTGC 1870 Query 635559 GGGATGCTAGTCCTAAA 635575 | || ||| || |||| Sbjct 1871 GAGAAGCTTCTCATAAA 1887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3708266792390368