Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq649943 89.7 6e-13 seq1304636 86.0 7e-12 seq1424254 82.4 9e-11 >seq649943 Length=678 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || || |||||||||||||||||||| ||||| || || || |||||||||||| Sbjct 557 ATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATGTTTTCCAT 616 Query 117045 AAAGTCAAATGGATTCT 117061 |||||||||||||||| Sbjct 617 GAAGTCAAATGGATTCT 633 >seq1304636 Length=3081 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||||| | ||||| ||||| |||||| ||||| ||||| || |||||||||| Sbjct 1881 CCTCATCTCTGCTGATAAGCTCATTGGAGAAGGTGAGGCCGGGCATCAGTCCCCGCTTCT 1822 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 | | ||| | || | ||| || || || ||||||||||| |||||||| ||||| Sbjct 1821 TGAGCCAGAATATTGATGCA-AAGGAGCCCGAGAAGAAGATCCCCTCCACGGCAGCAAAG 1763 Query 117412 GCAAAAAGGCGCTC 117425 || | || |||||| Sbjct 1762 GCCACAACGCGCTC 1749 >seq1424254 Length=5701 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || || ||||||| ||||||||||||| |||| | || || || || Sbjct 3867 CTCATCTTTGCTGGTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTTCC 3808 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| ||||| || || | ||| |||||||||||||| || || || Sbjct 3807 CAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGAGTGCC 3748 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 || || ||||| |||| || || || | ||| Sbjct 3747 TGTTTCTGTCTGAGACTCGATGATGGCATACCA 3715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579197956910720