Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1231921 87.8 1e-12 >seq1231921 Length=2451 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/196 (71%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| |||||||| ||| | | |||| |||||||| || || ||||| Sbjct 258 TCTTTCTGGATGTTGTAGTCCGATAGGATGCAACCATCCTCCAGCTGCTTGCCAACAAAT 317 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | | ||||||| | || | || ||||| | ||||| || || || Sbjct 318 ATCAGCCCT-GCTGGTCAGGTGGGATGCCTTCCTTATATTGGATCTTGGCCTTTAC--AT 374 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || |||||| || | | ||||| || || || | ||||||| Sbjct 375 TCTTGATGGTGTCACTGGGCTCAACCTCAAGACTGATGGTCTTGCCTGTCATGGTCTTCA 434 Query 34969 CAAAGATCTGCATATT 34984 |||||||||||||||| Sbjct 435 CAAAGATCTGCATATT 450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318848731507584