Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1102849 98.7 1e-15 seq649943 91.5 2e-13 seq1023260 89.7 6e-13 seq1396778 87.8 2e-12 >seq1102849 Length=1762 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || |||||||| || | ||||| || | || || ||||| ||||| ||||| || || Sbjct 787 TGGAATTCTCCCGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 846 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 || ||||| || | ||| ||||||||||| || |||||||| | |||| | ||| ||| Sbjct 847 TCGTTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTA 906 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 907 TTTCTTATACCATA 920 >seq649943 Length=678 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/150 (74%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT---CATTACTCCCAT 18668 ||| || || ||||||| | ||||||||||||| | ||||| ||| || ||||| Sbjct 494 TTAGAAGTCCGCATCCAAGGTAAAAGAATTCTCTG---TCGAATTTGACATCACCCCCAT 550 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | |||| || |||||||| || || ||||| |||| ||| || Sbjct 551 CCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATGTT 610 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATT 18758 |||||| || ||||||||||| | ||| || Sbjct 611 TTCCATGAAGTCAAATGGATTCTCTACTTT 640 >seq1023260 Length=1473 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || || || || |||| || || || || || | || ||||| || ||||| || || Sbjct 213 TCATCCCTGCTGATCAGCTCGTTTGAGAAAGTGAGTCCTGGCATGAGGCCTCTCTTCTTC 154 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| || ||||| ||||| || |||||||| || || || || Sbjct 153 AGCCAGAATATAGCAGCAAACGACCCAGAGAAGAAAATGCCTTCTACGGCAGCGAAGGCC 94 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 93 ACCACTCTTTCCCC 80 >seq1396778 Length=4658 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| |||||| ||||||| ||||| || | || || Sbjct 2570 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTTG 2629 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 ||||||||||| ||| ||| ||||| || || || || | |||||| | ||| ||| Sbjct 2630 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 2689 Query 48720 ATATATTGAGGTCTTTCA 48737 |||| || ||||||||| Sbjct 2690 ATATGCTGTGGTCTTTCA 2707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551835362305920