Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq968272 111 1e-18 seq1129844 102 6e-16 seq205041 98.7 8e-15 seq828480 95.1 1e-13 seq516430 91.5 1e-12 seq1310571 87.8 1e-11 >seq968272 Length=1310 Score = 111 bits (122), Expect = 1e-18 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || || ||||| || || || || || || || || || || Sbjct 198 GTTACTAATGCTGTGGTCACAGTGCCAGCCTACTTCAACGATTCTCAGCGACAGGCAACA 257 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||| ||| |||||||| || ||||| ||||| |||||||||||||| |||||| Sbjct 258 AAAGATGCCGGAACCATTGCTGGCCTCAATGTGCTTCGAATTATCAATGAACCAACTGCT 317 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||| ||||| | ||||| Sbjct 318 GCTGCTATTGCTTATGGGTTAGATAA 343 >seq1129844 Length=1879 Score = 102 bits (112), Expect = 6e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 550445 GCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCT 550504 || || |||||||| ||| |||||||| || ||||| ||||| |||||||||||||| Sbjct 753 GCAACAAAAGATGCAGGAACCATTGCTGGCCTCAATGTGCTTCGAATTATCAATGAACCC 694 Query 550505 ACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTC 550564 ||||||||||| |||| ||||| |||||||| | || | ||| ||||| ||| Sbjct 693 ACTGCTGCTGCTATTGCTTATGGGCTTGATAAGAAGGTTGGTGCTGAAAGGAATGTGCTC 634 Query 550565 ATCTTTGATTGTGGAG 550580 || ||||| | |||| Sbjct 633 ATTTTTGACTTGGGAG 618 >seq205041 Length=274 Score = 98.7 bits (108), Expect = 8e-15 Identities = 177/257 (69%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | || ||||| || || | ||||| | || ||||| || || || Sbjct 255 GGTATTGATCTTGGCACCACCTACTCCTGCATGGGTGTCTTCCAGAATGGAAAGGTGGAG 196 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||| || ||| ||||||||| |||| | ||| |||||| |||| || || | Sbjct 195 ATGATTGTCAGTGACCAAGGTAACTGAACCATGCCAAGCTATGTTGCTTTTACTGACAAA 136 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACTA 550175 ||| || |||| ||||| ||||| ||| | || || || || || || | Sbjct 135 GAATGATTGATTGGGGATGCTGCAAAGAATCTGGTTGCAATG--AACCCCACAAACATGG 78 Query 550176 TTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATA 550235 |||||||||| ||||| | || || || ||| ||||| | ||||||| | |||| Sbjct 77 TTTTTGATGCCTAACGTCTGATCGGGCTTAGGTTTGATGATGCTGTTGTTCAGTCTGATA 18 Query 550236 TGAAGCATTGGCCTTTC 550252 ||||||| ||||| ||| Sbjct 17 TGAAGCACTGGCCCTTC 1 >seq828480 Length=979 Score = 95.1 bits (104), Expect = 1e-13 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||| || | || |||||||| || || ||||| || || | | || || Sbjct 796 GTTACTAATGTTGTGGTCACAGTACCAGCCTACTTCAATGATTCTCAGCAACGGGCAACA 737 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||| ||| |||||||| || |||| ||||| |||||||||||||| |||||| Sbjct 736 AAAGATGCAGGAACCATTGCTGGCCTCAATGAGCTTCGAATTATCAATGAACCAACTGCT 677 Query 550511 GCTGCACTTGCATATGGACTTGATA 550535 ||||| || | ||||| | |||| Sbjct 676 GCTGCTATTCCTTATGGGATAGATA 652 >seq516430 Length=512 Score = 91.5 bits (100), Expect = 1e-12 Identities = 194/283 (69%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 552303 GATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATC 552362 ||||| |||||||| || |||||| | ||||| | ||| || ||||||| || ||| Sbjct 7 GATGTCACTCCTCTTTCCCTTGGTATTGAAACTGCTGGTGGAGGTATGACTGTACTCATC 66 Query 552363 GATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTT-CTACGTATTCAGATAA 552421 | ||||| || || ||||| || | | | | ||| |||| || || || || Sbjct 67 AAGTACAATACCACCATCCCTTGCAAGCAGACA-GAGACTTTCACTACCTACTCTGACAA 125 Query 552422 TCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAA 552481 ||| || ||| ||||| | | ||| || |||||| | || ||||| || Sbjct 126 TCAGCTTGGTGTGCTCATTCAGGTCTATGAGGGTGAAAGAGCCAAGGCCAAGGATAACAA 185 Query 552482 TCAACTTGGTACTTTT-AATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAA 552540 | ||||| | ||| || ||| | || || ||||| || ||| |||| || || |||| Sbjct 186 CCTGCTTGGGAAGTTTGAACTTACA-GGCATCCCTCCAGCACCT-GTGGGGTTCCTCAAA 243 Query 552541 TTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGT 552583 ||||||| ||||| || || ||||||||||| || | ||||| Sbjct 244 TTGAAGTCACTTTTGACATTGATGCCAATGGCATCCTCAATGT 286 >seq1310571 Length=3147 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | |||||||| || || || ||||| | ||||| ||||| || Sbjct 621 GTTACACATGCAGTTGTTACTGTACCCGCTTACTTCAATGATGCCCAACGGCAAGCAACC 680 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 ||||||||||| ||||||||||| ||||| | || || |||||||| || Sbjct 681 AAAGATGCTGGCACCATTGCTGGACTGAATGTCATGCGGATCATCAATGAGCC 733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3951972077162720