Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq1419845 84.2 3e-11 seq1326293 84.2 3e-11 >seq1419845 Length=5489 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 |||| || |||||||| || |||| |||||| ||| ||||||||||| || || Sbjct 2508 GGTAGCCCCTCATGTTGCACAAGGCATGAGTATCTCTGCTCCTCTCCAGAAGGCACCACC 2567 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| |||| || || || || |||||||| || || | || || | | || | Sbjct 2568 ACAGCTGCCCACTTCTGGAAAGTTCCATCTCCTGCAGGCCTGGTCTCAGCCAGTTCCATG 2627 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 || ||| | || || || || || || | ||| || | | || ||| | ||||| || Sbjct 2628 TCCTGAATCTGGTCCTCCCCATCACGTTGCCAGGTCAAGGTGATCTCAACTGGATAGAAG 2687 Query 14352 CCCAAAGCCCAGCACC 14367 |||| |||||||||| Sbjct 2688 CCCAGGGCCCAGCACC 2703 >seq1326293 Length=3334 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 2228 CAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGATCCATCTGACCTGTTCTGTCGA 2287 ||| || | || |||| | ||||| ||| ||| |||||||| ||||| ||| ||| | Sbjct 406 CAACCATACTCGCCTGTTTGAGAATGGGACCTGTGAGATCCACCTGACATGTATTGTGAA 465 Query 2288 GGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTTGGGCAAGA-CGCTTCTACGCG 2346 |||||| ||| | | ||| | |||| |||||| || | | | ||| || | Sbjct 466 GGATCCAAATCATACTGCCTCAGTTGGATGGCAGGCCTCAGGAAGCATCTCTT-TAGGGA 524 Query 2347 AGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAGTGAGCAGAACTACACGTGCA 2406 | || || |||| |||||||||||| | ||| |||||| |||| ||||| || Sbjct 525 AACCAAATCTCATTGACTCCTGGGACCCGAAGAATTCCAGTGATCAGAGTTACACCAGCC 584 Query 2407 TCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTCGGCCCAGA 2454 || || |||||||| || ||||| || || | |||| ||||||| Sbjct 585 AAGCTGAGAACGCTGTCAGTAATCTGTCCATCTCTATCTCTGCCCAGA 632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617782042666880