Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1304636 100 5e-16 seq1023260 87.8 3e-12 seq1424254 84.2 4e-11 >seq1304636 Length=3081 Score = 100 bits (110), Expect = 5e-16 Identities = 106/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| | || ||||||||||| |||||||| ||||| ||| || || ||||| Sbjct 1746 GGAGAGCGCGTTGTGGCCTTTGCTGCCGTGGAGGGGATCTTCTTCTCGGGCTCCTTTGCA 1805 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 | || |||||||||||| || |||||| |||||||| || ||| ||||| ||||| Sbjct 1806 TCAATATTCTGGCTCAAGAAG-CGGGGACTGATGCCCGGCCTCACCTTCTCCAATGAGCT 1864 Query 25992 CATCAGCAGGGACGAGG 26008 |||||||| || |||| Sbjct 1865 TATCAGCAGAGATGAGG 1881 >seq1023260 Length=1473 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||| ||||| || || ||||| || ||| || |||||||| || || |||| Sbjct 90 TGGTGGCCTTCGCTGCCGTAGAAGGCATTTTCTTCTCTGGGTCGTTTGCTGCTATATTCT 149 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001 |||| ||| ||| || |||||| || || ||||| || |||||||| ||||||||| Sbjct 150 GGCTGAAGAAGAGAGGCCTCATGCCAGGACTC-ACTTTCTCAAACGAGCTGATCAGCAGG 208 Query 26002 GACGA 26006 || || Sbjct 209 GATGA 213 >seq1424254 Length=5701 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 ||||| || ||| ||||||||| || || |||||||| ||||||||||| |||||||| Sbjct 3869 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTT 3810 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851 ||||||| | || || ||| ||||| | || ||||||||||| | ||| | Sbjct 3809 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGAGTG 3750 Query 221852 CCAGTCTCCAGCTGAG 221867 || || || ||||| Sbjct 3749 CCTGTTTCTGTCTGAG 3734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 911868675128320