Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1129844 123 2e-22 seq968272 111 1e-18 seq205041 105 4e-17 seq539048 102 5e-16 seq516430 98.7 6e-15 seq828480 96.9 2e-14 seq485453 89.7 3e-12 >seq1129844 Length=1879 Score = 123 bits (136), Expect = 2e-22 Identities = 363/553 (66%), Gaps = 26/553 (5%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| ||||||||||| | || || || ||| || || | ||||| || |||| || Sbjct 1189 TGCACTTGGTATTGATCTTGGCACCACCTACTCCTGCGTGGGTGTTTTCCAGCATGGAAA 1130 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || | |||||||| |||||||| ||||| |||| | ||| |||||| ||||||| Sbjct 1129 GGTGAAGATAATTGCTAATGACCA-GGTAACGGAACCATGCCAAGGTATGTTGCTTTTAC 1071 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 ||| || |||| | ||||| ||| |||| || |||| | |||| || || || Sbjct 1070 TGACACAGAACGATTAATTGGGGATTCTGCAAAGAATCAGGTTGCAATGAACCCCACGAA 1011 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || ||||| || ||| | |||| | | || ||||||||| ||| || | Sbjct 1010 CACAGTTTTTAATAACAAATGTCTGATCTGGCATAGGTTTGATGATGT---TGTTCAGAC 954 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 ||| ||| || ||| | || | |||| | || ||| || | || | | ||| Sbjct 953 TGACATGAAGCACTGGTCCTTCATGGTGGTGAACAATGGAGGCAGGCCCAAGGTCCAAGT 894 Query 474628 A--ATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | ||||| | || || | ||| || | || ||| | | || || ||| | || Sbjct 893 AGAATACAAG--GGAGAGGCAAAAAGTTTCTACCCAGAAGAGGTGTCCTCTATGATCCTA 836 Query 474686 GCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745 | ||||| ||| ||| | ||||||| |||| | | | | | Sbjct 835 ----AGATGAAGGAAATCGCAGAAGCCTATCTTG----AGAATT--------CTATTACT 792 Query 474746 ACTGTTCCAG-CA-TATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 | |||| || || || || |||| |||||| | | ||||| |||||||| |||| | Sbjct 791 AATGTTGCATTCACTACTTCAATGGTTCTCAGTGATAGGCAACAAAAGATGCAGGAACCA 732 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 |||| || || ||||| | || ||||| |||||||| || || || || ||||||||| Sbjct 731 TTGCTGGCCTCAATGTGCTTCGAATTATCAATGAACCCACTGCTGCTGCTATTGCTTATG 672 Query 474864 GTCTTGATAAGAA 474876 | ||||||||||| Sbjct 671 GGCTTGATAAGAA 659 >seq968272 Length=1310 Score = 111 bits (122), Expect = 1e-18 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| |||| || | || || ||||| || || || |||||||| || || ||||| Sbjct 198 GTTACTAATGCTGTGGTCACAGTGCCAGCCTACTTCAACGATTCTCAGCGACAGGCAACA 257 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| |||| ||||| || || ||||| | || ||||| ||||||||||| || Sbjct 258 AAAGATGCCGGAACCATTGCTGGCCTCAATGTGCTTCGAATTATCAATGAACCAACTGCT 317 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || |||||||||| | |||||||| Sbjct 318 GCTGCTATTGCTTATGGGTTAGATAAGAA 346 Score = 109 bits (120), Expect = 4e-18 Identities = 229/339 (68%), Gaps = 2/339 (1%) Strand=Plus/Plus Query 475484 AGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACT 475543 || ||||| | ||||| |||||||| || ||||| | || || || || || | Sbjct 652 AGGCGTCTGCGTACTGCCTGTGAACGGGCAAAGCGCACCCTCTCCTCCAGCACCCAGGCC 711 Query 475544 ACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCT 475603 | | |||| | |||||||| | ||| ||||| |||| |||| ||||| | ||| Sbjct 712 AGTATTGAGATCGATTCTCTCTATGAGGGAATCGATTTCTATACCTCCATTACCCGTGCT 771 Query 475604 AAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTT 475663 ||||||||| | | |||| || || ||| || | || || || ||| | | Sbjct 772 CGATTTGAAGAATTAAATGCTGACCTGTTCAGAGGCACCCTGGACCCTGTAGAAAAGGCC 831 Query 475664 CTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCA 475723 || ||||| |||| || ||||| ||||| ||||||| ||||| || || || || || Sbjct 832 CTTCGAGATGCTAAGCTAGACAAGTCACAGATCCATGACATTGTCCTGGTTGGTGGGTCT 891 Query 475724 ACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTT-AATGGTAAAAAGTTAAA 475782 || ||||| || || || |||| | | || | | || ||||| ||| | | || Sbjct 892 ACCAGAATCCCCAAGATTC-AGAAGCTCCTGCAAGACTTCTTCAATGGAAAAGAACTGAA 950 Query 475783 TGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 | | || | || || |||||||||||||| ||||| || Sbjct 951 TAAGAGCATTAACCCCGATGAAGCTGTTGCTTATGGTGC 989 >seq205041 Length=274 Score = 105 bits (116), Expect = 4e-17 Identities = 180/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| ||||||||||| | || || || ||| || | | ||| | || ||||| || Sbjct 262 TGCAGTTGGTATTGATCTTGGCACCACCTACTCCTGCATGGGTGTCTTCCAGAATGGAAA 203 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || || || |||| || |||||||||||| |||| | ||| |||||| ||||||| Sbjct 202 GGTGGAGATGATTGTCAGTGACCAAGGTAACTGAACCATGCCAAGCTATGTTGCTTTTAC 143 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 ||| | ||| | ||||| |||||||| || ||| | |||| || || || Sbjct 142 TGACAAAGAATGATTGATTGGGGATGCTGCAAAGAATCTGGTTGCAATGAACCCCACAAA 83 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 | |||||||||| || | |||| || | || ||||||||| | ||| || || Sbjct 82 CATGGTTTTTGATGCCTAACGTCTGATCGGGCTTAGGTTTGATGATGCTGTTGTTCAGTC 23 Query 474568 TGATATGCGTCATTGGCCTTT 474588 ||||||| || ||||| || Sbjct 22 TGATATGAAGCACTGGCCCTT 2 >seq539048 Length=537 Score = 102 bits (112), Expect = 5e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| ||||||||||| | || || || ||| || || | ||| | || |||| || Sbjct 13 TGCAGTTGGTATTGATCTTGGCACCACCTACTCCTGCGTGGGTGTCTTCCAGCATGGAAA 72 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || || |||||||| |||||||| ||||| | || || ||| |||||| ||||||| Sbjct 73 GGTGGAGATAATTGCTAATGACCAGGGTAACCGGACCACGCCAAGCTATGTTGCTTTTAC 132 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCA 474493 ||| || |||| | ||||| |||||||| || |||| | |||| Sbjct 133 TGACACAGAACGATTAATTGGGGATGCTGCAAAGAATCAGGTTGCA 178 >seq516430 Length=512 Score = 98.7 bits (108), Expect = 6e-15 Identities = 191/281 (68%), Gaps = 1/281 (0%) Strand=Plus/Plus Query 475886 GACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATT 475945 || || ||||| ||||| | ||| ||||||| | ||| || ||||||| || || Sbjct 7 GATGTCACTCCTCTTTCCCTTGGTATTGAAACTGCTGGTGGAGGTATGACTGTACTCATC 66 Query 475946 GACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAAT 476005 | ||||| | ||||| ||||| | || | || | || || ||||| ||| Sbjct 67 AAGTACAATACCACCATCCCTTGCAAGCAGACAGAGACTTTCACTACCTACTCTGACAAT 126 Query 476006 CAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAAC 476065 || ||| ||| || ||| ||| ||||||||| | || ||||| ||| Sbjct 127 CAGCTTGGTGTGCTCATTCAGGTCTATGAGGGTGAAAGAGCCAAGGCCAAGGATAACAAC 186 Query 476066 AAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATT 476125 ||||| | ||| | ||| ||| || ||||| || || | || |||||||||||| Sbjct 187 CTGCTTGGGAAGTTTGAACTTACAGGCATCCCTCCAGCACCT-GTGGGGTTCCTCAAATT 245 Query 476126 GAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGT 476166 ||||| |||||||| |||||||| ||||| || || ||||| Sbjct 246 GAAGTCACTTTTGACATTGATGCCAATGGCATCCTCAATGT 286 >seq828480 Length=979 Score = 96.9 bits (106), Expect = 2e-14 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 474713 TATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCT 474772 |||||||| | | || ||| ||| || | || || ||||| || || ||||||||| Sbjct 811 TATCTTGGGAAGGCTGTTACTAATGTTGTGGTCACAGTACCAGCCTACTTCAATGATTCT 752 Query 474773 CAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATT 474832 || | | ||||| |||||||| |||| ||||| || || |||| | || ||||| Sbjct 751 CAGCAACGGGCAACAAAAGATGCAGGAACCATTGCTGGCCTCAATGAGCTTCGAATTATC 692 Query 474833 AATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTA 474892 ||||||||||| || || || || ||||||| | |||| ||| ||| | ||| Sbjct 691 AATGAACCAACTGCTGCTGCTATTCCTTATGGGATAGATAGGAAGGCTGGCGCTGAAAGG 632 Query 474893 AATGTTTTAATCTTTGA-TTGTGGAGGT 474919 ||||| | || ||| | |||||| ||| Sbjct 631 AATGTGCTGATTTTTTACTTGTGGGGGT 604 >seq485453 Length=480 Score = 89.7 bits (98), Expect = 3e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 476028 TCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTG 476087 ||| |||||||||||| | || || || || ||| ||||| | ||| | ||| Sbjct 32 TCTATGAAGGTGAAAGGGCCATGACCAAGGACAACAACCTGCTTGGGAAGTTTGAACTTA 91 Query 476088 AAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATG 476147 ||| || ||||| || || | || |||||||| |||||||| |||||||| ||||||| Sbjct 92 CAGGCATCCCTCCAGCACCTCGTGGTGTTCCTCAGATTGAAGTCACTTTTGACATTGATG 151 Query 476148 CAAATGGTATTCTTAATGT 476166 | ||||| || || ||||| Sbjct 152 CCAATGGCATCCTCAATGT 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3205461435834944