Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1430035 334 9e-87 seq785234 138 1e-27 seq1439907 107 2e-18 >seq1430035 Length=6032 Score = 334 bits (370), Expect = 9e-87 Identities = 670/986 (68%), Gaps = 13/986 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 ||||||||| |||| ||| |||| ||| || |||||| || ||| || ||||| || Sbjct 3115 CAGATGTTCATCCAAACACTGGATGGCAAAAGGGTCAACATCCATGTCAAACTTATTGGC 3174 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 || | ||||| || | || |||||| || ||| || | ||||| || || || Sbjct 3175 AAAAAAGTGGTGT---TTGCGAAGCATCCAGCTCAAGTCACCAGCTCCGAAAACACACAC 3231 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | |||||| ||| |||| || ||||| |||| ||||| ||||||||||| Sbjct 3232 GGAGCGCACGTGCACCCCGCTGCATGGTGGGTAAGGAGCGCCTTTGAAAACGTCACCTTC 3291 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| |||||||| || | || | ||| || || ||| || || | Sbjct 3292 AAAGTACTGCCACTTGACAAACCTAGCGACAGCATTCATATCAGACAAGTCATACTTATT 3351 Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350 | | |||||| | ||| || || || || || | || | |||||||| |||| | Sbjct 3352 GCTTGAGGGGAGAGA-ACCAGGGACCCCAGGGATCCTTTGGACAGTGGCCCAGAGGTACT 3410 Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGC- 160409 | || |||||||||||||||| | ||| |||||||||| | ||| | | | | | Sbjct 3411 CATCTGGGCTGTACGTGTCCTGTGCCCACTCCATGAACTTTTGGAT-ATCTTCATTCTCT 3469 Query 160410 AGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGG- 160468 || || | || || || | || || ||||| || ||||| || || | || Sbjct 3470 AGCACATACCCTACATATTCCCTACTGACTACGAAGTAGGCACTGCCTGAAAAGAGAGGA 3529 Query 160469 --TATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACC 160526 | || || |||| | | ||||| | || ||||| | || | || | || Sbjct 3530 GTTTTGAGTGGAGGCTGTG---CTTTGGCTACTCCAGTGTTGGTCAGCTTCCCATCAACA 3586 Query 160527 AGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGA 160586 | || | ||| || ||||| || | ||||| | | ||||| || || || || Sbjct 3587 ATGGCATATCGTTTTTTCCATCTTTCTTCCTTGTTCTGAGGCATCTTCTCAGTTTCCAGG 3646 Query 160587 CTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGA 160646 |||| |||| || || || |||| | |||| || |||||||| || |||| || Sbjct 3647 TTGTTTTCACCCGAGAAGGACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTGATAGGG 3706 Query 160647 AAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCC 160706 ||||| |||| || | || |||| ||||||||| | || |||| || ||||||| Sbjct 3707 AAGTCCATACCACAAAGATTGATCAAGTACTTCCAGCTTGCACTCATCCTGTACAGGTCC 3766 Query 160707 CTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGT 160766 |||| ||||| | || |||||||| || |||||||| || || || || ||||| || Sbjct 3767 TTCATACAATTGAGGTCAGCCTGCACCCGACTCCAGGATGCATAAACAACATTCTCCAGC 3826 Query 160767 TTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAAC 160826 | |||||||||||||||||| |||| || ||| | || |||| |||||| || || Sbjct 3827 TGGCTGGCCACAAAGACGTTACCGAAGCAGGACGCAATGCCCATCACCGCGGCTAAAAAG 3886 Query 160827 ATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCC 160886 | || | ||| ||||||||| | ||| || | ||||||||| ||||||||| Sbjct 3887 GATTCCTCAGTTTTTTTGTCCACGTGGATGCAGTAGAAATTCTGAGGCATATAGATGGCC 3946 Query 160887 CTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGA 160946 || || | ||| || | ||| || ||||| || || | ||| || || || || || ||| Sbjct 3947 CTCAGGAGCCTGTCAAGCATTTCAATCTTGTGGTGAACCACTATGGAATACGCAATTGGA 4006 Query 160947 AACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAA 161006 || | ||| || || |||| | | || || |||||| |||| ||| || Sbjct 4007 AAGCCTACCTCTTCTTTGCTAAGGGGCTGTACAATATATTTGCGCGTCCTGATGAAAGAA 4066 Query 161007 TCACAATCCCGCGTCATGTTGATATA 161032 |||| || || |||||||| ||||| Sbjct 4067 GCACAGTCACGGGTCATGTTTATATA 4092 >seq785234 Length=896 Score = 138 bits (152), Expect = 1e-27 Identities = 225/322 (70%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | | |||| || ||||| || || | || || |||||||||||| Sbjct 488 TAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAAACAAATGTATTGAAGAGGCAC 547 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| |||||||||| || |||| || || ||||| || || | ||| ||| | ||| Sbjct 548 ATGTAGCAGCCTTCATCATCCAGTGTTGTGTTCCAGAAGGTGATGCTTGTGTTCCAGAGT 607 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| || || ||||| || ||| |||| | |||||| |||||||| || ||| | Sbjct 608 CCCAGCTCGGTGATGTTTACCTTGTCTCTATATGCAGGTTGGACTACAACCCCATGGGTT 667 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 | |||| | ||||||||||| || ||||| || || | |||||||| || || ||| Sbjct 668 TTGCTGTAAGTGGCCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAATC 727 Query 168390 AGAACCTCTT--TATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTT 168447 | || | || | | ||| ||||||| | || || || |||| |||||| | Sbjct 728 AATGGTTCCTGGGATTG--TTTCAGAGAACATCGTAAGGATGCAGGTGTGTGCAGCAGCT 785 Query 168448 CTCGCTCATCTTGAGTTACGAC 168469 || ||||| || || || || Sbjct 786 TTCTTTCATCCTGGGTCACCAC 807 >seq1439907 Length=6777 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||||||| | | |||| || |||| |||||| | ||||| || |||| | | | Sbjct 3420 AGATATTTTGCCAACTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCAGCT 3361 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || |||||||| |||| || | ||||| | || | ||||| | | || Sbjct 3360 GGAATATAATTTTCATAGTTTTCCCTAGGTGGTCCCAGGACAACAGGTACTGAGCCAGCC 3301 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 || |||| |||| |||||||| |||||| || ||||||||||||||||||||| Sbjct 3300 AAAAATGCATTATAGAGCTTTTCTGTGATGTAATCTTTGTGAATTGAGTTTTCAAAAGAA 3241 Query 176412 AAATAGAACTTACA 176425 | ||| || ||||| Sbjct 3240 AGATAAAATTTACA 3227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566669595569280