Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq649943 89.7 6e-13 seq1304636 86.0 7e-12 >seq649943 Length=678 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 |||||||||||||||| |||||||||||| || || || ||||| ||||||||||||| Sbjct 633 AGAATCCATTTGACTTCATGGAAAACATTTCACTAGAAGGAAAGACAAACTTCTTTGAGA 574 Query 65501 AGCGAGTTGGGGACTAT 65517 ||||||| || || ||| Sbjct 573 AGCGAGTGGGCGAGTAT 557 >seq1304636 Length=3081 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GC 65135 |||||| || | || ||||| |||||||| ||||||||||| || || || ||| | Sbjct 1749 GAGCGCGTTGTGGCCTTTGCTGCCGTGGAGGGGATCTTCTTCTCGGGCTCCTT-TGCATC 1807 Query 65136 TATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTAT 65195 || | ||| | ||||||||||| || ||||| ||||| |||||| ||||| ||||| Sbjct 1808 AATATTCTGGCTCAAGAAGCGGGGACTGATGCCCGGCCTCACCTTCTCCAATGAGCTTAT 1867 Query 65196 TTCCCGAGATGAGG 65209 | ||||||||| Sbjct 1868 CAGCAGAGATGAGG 1881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 585666336048640