Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq256873 214 3e-49 seq1298574 96.9 5e-14 seq630007 96.9 5e-14 seq1177811 93.3 7e-13 seq581097 87.8 3e-11 >seq256873 Length=302 Score = 214 bits (236), Expect = 3e-49 Identities = 201/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| || ||||| || ||||| ||| ||||||| || ||| ||| Sbjct 283 TGTACTTGGTGACAGCCTTAGTGCCCTCGGACACGGCATGCTTGGCCAGCTCCCCGGGCA 224 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||| | ||| |||| ||| || |||||||||| Sbjct 223 GCAGCAGACGCACGGCCGTCTGCACCTCTCGGGACGTGATGGTCGAGCGCTTGTTATAAT 164 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||||| || ||||||| |||| ||||||||||| || ||||||| Sbjct 163 GCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAATGTCGTTGACGAAGGAGTTCA 104 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 103 TGATGCCCATGGCTTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 44 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 43 ACACATAGATGGAGTA 28 >seq1298574 Length=3016 Score = 96.9 bits (106), Expect = 5e-14 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || || ||||| | |||||||| || ||| Sbjct 105 TGTACTTGGTGACGGCCTTGGTGCCCTCCGACACTGCGTGTTTAGCCAGTTCCCCCGGCA 46 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 | |||||||||||| ||||||||||| || Sbjct 45 GCAGCAGGCGCACGGCTGTCTGGATCTCCCG 15 >seq630007 Length=650 Score = 96.9 bits (106), Expect = 5e-14 Identities = 104/137 (76%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 1485577 CGCTTGTTAGTGCGCGCCAGGCGGCCGG---CCTCGGTGCCGATGCGGTCGATCATGTCG 1485633 |||||||| ||||||||| | || ||||| | ||||||| |||| ||||| Sbjct 623 CGCTTGTTGTAATGCGCCAGGCTTCGGGAAGCCTCGCCGGCGATGCGCTCGAAGATGTCA 564 Query 1485634 TTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACC 1485693 |||||||| ||||||||||| ||| | ||| ||||||||| |||||||||||| Sbjct 563 TTGACAAATGAGTTCATGATGCCCATGGGCTTGGAAGAGATGCCCGTGTCGGGGTGCACT 504 Query 1485694 TGCTTGAGCACCTTGTA 1485710 ||||| ||||| ||||| Sbjct 503 TGCTTCAGCACTTTGTA 487 >seq1177811 Length=2117 Score = 93.3 bits (102), Expect = 7e-13 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || || |||||||| | |||| || ||| ||| Sbjct 2013 TGTACTTGGTGACGGCCTTGGTGCCTTCCGACACGGCGTGTTTAGCCAACTCTCCGGGCA 2072 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 | |||||||||||| ||||||||||| || Sbjct 2073 GCAGCAGGCGCACGGCTGTCTGGATCTCCCG 2103 >seq581097 Length=586 Score = 87.8 bits (96), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| || ||||||||| ||||||| || ||| ||| Sbjct 78 TGTACTTGGTGACGGCCTTAGTGCCCTCAGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 19 Query 1485530 TGATCAGGCGCACGGC 1485545 | |||||||||||| Sbjct 18 GCAGCAGGCGCACGGC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7760713175874192