Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq91636 123 2e-23 seq1351965 96.9 2e-15 seq1231921 95.1 8e-15 >seq91636 Length=227 Score = 123 bits (136), Expect = 2e-23 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | |||||||||||| | |||| ||||||||| ||||| ||||| || Sbjct 197 CCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 138 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 137 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 78 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||||||||| | || ||| ||||| || || || | ||| ||| ||||| Sbjct 77 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGA 20 Query 34929 CATCAACGGTTATGGTCTT 34947 | || | ||| |||||||| Sbjct 19 CCTCCAGGGTGATGGTCTT 1 >seq1351965 Length=3703 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/214 (69%), Gaps = 19/214 (9%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||||||| |||||| ||| ||||| ||||| |||||||||||| || | ||| ||| Sbjct 2173 ACCAGGTGCATGGTGAACTCTTTCTGGATGTTGTAGTCCGATAGGGTGAGACTATCCTCC 2114 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||| || || || ||||| | |||||||| | || | || ||||| || | Sbjct 2113 AGCTGCTTGCCAGCAAACATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGG 2054 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGG----TTATGGT 34944 || || ||| ||| ||| |||||| |||| | | ||||| Sbjct 2053 ATCTTGGCCTTG---------------TCACTGGGCTCGACCTCAAGAGTGATTGATGGT 2009 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || |||||||| || |||||||||||| Sbjct 2008 CTTGCCTGTCAGGGTCTTCACGAAGATCTGCATG 1975 >seq1231921 Length=2451 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/210 (71%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 34770 CCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCA 34829 ||||||| | ||| ||| ||||| ||||| |||||||||||| ||| |||| |||| Sbjct 241 CCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCCGATAGGATGCAACCATCCTCCA 300 Query 34830 GTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTA 34889 | ||||| || | || ||||| | |||||||| | || | || ||||| | | | Sbjct 301 GCTGCTTGCCAACAAATATCAG-CCCTGCTGGTCAGGTGGGATGCCTTCCTTATATTGGA 359 Query 34890 TTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTT 34947 | || || || || || || | ||| ||| ||| || |||| | |||||||| Sbjct 360 TCTTGGCCTTTAC--ATTCTTGATGGTGTCACTGGGCTCAACCTCAAGACTGATGGTCTT 417 Query 34948 TCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | |||||| |||||||||||||| Sbjct 418 GCCTGTCATGGTCTTCACAAAGATCTGCAT 447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 319889056897232