Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1129844 138 8e-27 seq828480 122 6e-22 seq968272 113 3e-19 seq1357177 89.7 4e-12 seq1343236 89.7 4e-12 >seq1129844 Length=1879 Score = 138 bits (152), Expect = 8e-27 Identities = 512/791 (65%), Gaps = 35/791 (4%) Strand=Plus/Plus Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC--AAT----ATTTTGAAGT 281734 ||||| | |||||| ||||||||||||||||| | || | ||| || ||| | Sbjct 1 GTTTCAATACCAAGGGAAAGAGGAGTGACATCCAAGAGCAGCAAATCCTAATCCTGA--T 58 Query 281735 TTTTCATCAGT-TTGAC--CAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 281791 | ||| |||| ||| | || ||||| | ||| || | ||| |||||||| |||||| Sbjct 59 TGTTC-TCAGACTTGTCTCCAGATAGAATGGTTGCCTGCACAGCTGCACCATAAGCAACA 117 Query 281792 GCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGT 281851 | |||||| || |||||| | | ||| |||| ||| |||||||| || | || || Sbjct 118 GTTTCATCTGGGTTAACACTCTTATTCAGTTCTTTTCCATTGAAGAAGCCTTGCAGGAGC 177 Query 281852 TGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGA 281910 | ||| | ||| || || | || || || ||||| | ||||| ||||| | |||| | Sbjct 178 T-TCTGAATCTTGGGGATTCTAGTAGAACCGCCAACCAGGACAATGTCATGAATCTGTAA 236 Query 281911 TTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAA 281970 || || || || | ||| | ||||| || | || || |||||||||| Sbjct 237 CTTGTCTAGCTTAGCATCTCGAAGGGTCTTTTCTACAAGATCCAGGATGCCTCTAAACAA 296 Query 281971 GTCTGAACAAAGTTCTTCGAATTTAGC-----TCTAGTAAGAGTGACATTATAATCAATT 282025 ||| | | | ||||| |||| ||| | ||| || || | | |||| ||| Sbjct 297 GTCAGCATTTAATTCTTGGAATCGAGCATTGGTATAGAAATAGAGGTGTAGAAATCGATT 356 Query 282026 CCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTA 282085 | || | |||||||| |||| | || || || || || |||| || Sbjct 357 TCCTC----ATAGAATCAATCACAATACTGGTCTGGGTGCTGGAGGAAAGTGTGTACTTT 412 Query 282086 GCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCTGATTGATTCAAATC 282141 || ||||||| || || || | | | | ||| | || | |||| || Sbjct 413 GCCGGTTCACAGGCAGTATGCAGATTCCTGACAGATCTCTTGTTCTCACTGATG----TC 468 Query 282142 TGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAA 282199 | || | ||| ||| || || ||| | ||| | || | | |||||||| Sbjct 469 CTTCTTGTGCTTTTGCTTAAACTCAGCAAGGAA--ATGGTTGACCATTCTGTTATCAAAG 526 Query 282200 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 282259 ||||| || | || | |||||||| | || | | |||| |||| | ||| ||| Sbjct 527 TCTTCTCCACTAAAGTGGGTATTTCCAGCTGTTAATTTGACTTCAAAAATTTCATTCTCA 586 Query 282260 AGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 282319 | || | | | |||||| | ||| | |||| |||||||| || |||||| || Sbjct 587 ATAGTGAGGATTGACACATCAAACATACCAACTCCCAAGTCAAAAATGAGCACATTCCTT 646 Query 282320 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 282379 || | || |||||||| ||||| |||| |||||||||||| |||||||| ||| Sbjct 647 TCAGCACCAACCTTCTTATCAAGCCCATAAGCAATAGCAGCAGCAGTGGGTTCATTGATA 706 Query 282380 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 282439 |||| | ||||| || |||||||| ||||||||||||| || || | || || ||| Sbjct 707 ATTCGAAGCACATTGAGGCCAGCAATGGTTCCTGCATCTTTTGTTGCCTATCACTGAGAA 766 Query 282440 TCGTTAAAATA 282450 | || || || Sbjct 767 CCATTGAAGTA 777 >seq828480 Length=979 Score = 122 bits (134), Expect = 6e-22 Identities = 531/833 (64%), Gaps = 28/833 (3%) Strand=Plus/Plus Query 281675 CCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGT 281734 ||||| ||||| | |||||| ||||||||||||||||| | || | | || |||| Sbjct 1 CCAGCAGTTTCAATACCAAGGGAAAGAGGAGTGACATCCAAGAGCAGCACATCCTGAACA 60 Query 281735 TTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCT 281794 || ||| | | ||| |||| | || || | || |||||||| ||||||||| Sbjct 61 TTCTCAGACTTGTCTCCAGATGGAATGCCCGCCTGGACAGTTGCACCATAAGCAACAGCT 120 Query 281795 TCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGT 281854 |||| || |||| | | ||| |||| ||| |||||||| || | | ||||| Sbjct 121 TCATTGGG-TTAATGCTCTTATTCAGTTCTTTTCCATTGAAGAAGTCTTGCAGAAG---- 175 Query 281855 CTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 281914 |||| ||| | | || || | ||| | ||||| ||||| | |||||| || Sbjct 176 ----CCTTC--AATTCTGGTAGAACCACTAACCAGGACAATGTCATGGATCTGTGACTTG 229 Query 281915 TCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCT 281974 || ||||| || || || | ||||| || || || || |||| |||||||| Sbjct 230 TCTAGTTTAGAGTCTCATTGGGCCTTTTCTACAGGGTCCAGGGTGTCTCTGAACAAGTCC 289 Query 281975 GAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAAC 282034 | | | ||||| |||| ||| | ||| | | || |||| ||||| | | | Sbjct 290 GCATTTAATTCTTTGAATCAAGCACAGATAATGGAGGTATAGAAATCGATTCCCTTGTAG 349 Query 282035 AAAGAATCAACTTCAATCGTAGTTTGAGTC--GAAGAAGATAGTGCACGTTTAGCACGTT 282092 | | ||| || ||| | | | || || |||| ||| ||||| || || | || Sbjct 350 AGAAAATTAATCTCAGTACTGGCCTGGGTGCTGAAGGAGAAGATGCACTTT--GCCCATT 407 Query 282093 CACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTGATTGATTCAAATCTGTTTTA 282148 |||| || | ||| | | ||| | | || |||| || | || Sbjct 408 CACAGGCAATATGTAGATACCTGACAGCTCTCTTGTTCTCGCTGATG----TCCTTCTTG 463 Query 282149 TATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCAC 282206 | |||| ||| || || ||| | ||| | || | | |||||||| ||||| | Sbjct 464 TGCTTTCACTTAAACTCAGCAATGAA--ATGGTTGACCATTCTTTTATCAAAGTCTTCTC 521 Query 282207 CTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACA 282266 | ||| | | | ||| | || | | | |||| ||| |||||| || | || | Sbjct 522 CATGCAAGTGGTTGTCTCCAGCTGTTGATTTGACTTCAAAATTTCCATCCTCGATAGTGA 581 Query 282267 AAAGAGTAACATCATGGGTTCCACCACC-CATATCAAAAATAAGTACATTCATTTCTTTG 282325 | | |||||| || ||||| || || | |||||| || |||||| |||| | Sbjct 582 GGATTGACACATCAAAAGTACCACCCCCACAAGTAAAAAATCAGCACATTCCTTTCAGCG 641 Query 282326 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 | || |||| | ||||| | || ||||||||||||||||||||| ||||||| Sbjct 642 CCAGCCTTCCTATCTATCCCATAAGGAATAGCAGCAGCAGTTGGTTCATTGATAATTCGA 701 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 | |||| || |||||||| ||||||||||||| || || || || ||||| || Sbjct 702 AGCTCATTGAGGCCAGCAATGGTTCCTGCATCTTTTGTTGCCCGTTGCTGAGAATCATTG 761 Query 282446 AAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGC 282498 || || || || || || | || ||| || || | || |||| ||| || Sbjct 762 AAGTAGGCTGGTACTGTGACCACAACATTAGTAACAGCCTTCCCAAGATAGGC 814 >seq968272 Length=1310 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||| | ||||| |||| ||||||||||||||||||||| ||||||| | ||| Sbjct 346 TTCTTATCTAACCCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATAATTCGAAGCACA 287 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| |||| |||||||| || || |||| || |||||||| || || Sbjct 286 TTGAGGCCAGCAATGGTTCCGGCATCTTTTGTTGCCTGTCGCTGAGAATCGTTGAAGTAG 227 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || || || | || |||| Sbjct 226 GCTGGCACTGTGACCACAGCAT 205 >seq1357177 Length=3790 Score = 89.7 bits (98), Expect = 4e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| ||||| || ||||| ||||| ||||| ||||||||| | || || | ||||| Sbjct 405 TGTTGTAGCTACTATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTTAT 346 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || |||| ||| | || ||| ||||| || ||||| |||||||| || || Sbjct 345 TCATTATGGCACTCCTAAGGAAATGGAATCCTATTACCAGGAAATCGGTAGAGCTGGCCG 286 Query 131296 TGATGGA 131302 |||||| Sbjct 285 CGATGGA 279 >seq1343236 Length=3568 Score = 89.7 bits (98), Expect = 4e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 400295 AATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTA 400354 ||||||| || || |||| |||||||| ||||| ||||| | || | || |||||| Sbjct 1751 AATGTACACTTATCCTGACTGAGGGAGACTCAGCCAAAACTCTGGCAGTTTCAGGCCTTG 1810 Query 400355 ATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTA 400414 ||| ||||||||||| | ||||| || || || |||||||||||| | | ||||| Sbjct 1811 GTGTAGTTGGAAGAGATAAATATGGGGTATTTCCTCTTAGAGGAAAAATACTCAATGTGC 1870 Query 400415 GGGATGCTAGTCCTAAA 400431 | || ||| || |||| Sbjct 1871 GAGAAGCTTCTCATAAA 1887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3668846094152928