Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1231921 131 3e-25 seq91636 104 4e-17 seq649457 93.3 8e-14 seq914473 89.7 1e-12 seq357660 87.8 3e-12 >seq1231921 Length=2451 Score = 131 bits (144), Expect = 3e-25 Identities = 152/204 (75%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||||| ||| || |||||||| || || || || ||||| || | ||| || || || || Sbjct 245 GTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCCGATAGGATGCAACCATCCTCCAGCTG 304 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || ||| |||| || || | | | || || || || || |||||||||| ||| ||||| Sbjct 305 CTTGCCAACAAATATCAGCCCT-GCTGGTCAGGTGGGATGCCTTCCTTATATTGGATCTT 363 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || |||||||| | || || ||| | || || || || | | | || ||||||||||| Sbjct 364 GGCCTTTACATTCTTGATGGTGTCACTGGGCTCAACCTCAAGACTGATGGTCTTGCCTGT 423 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| |||||||| Sbjct 424 CATGGTCTTCACAAAGATCTGCAT 447 >seq91636 Length=227 Score = 104 bits (114), Expect = 4e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || || || ||||| || || || || || || | | || Sbjct 185 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 126 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||||||||| || || || || || || || || || ||||| Sbjct 125 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 66 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || |||||||| || ||||| || || || ||| | || || || |||| || || Sbjct 65 TCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATG 6 Query 82776 GTCTT 82780 ||||| Sbjct 5 GTCTT 1 >seq649457 Length=677 Score = 93.3 bits (102), Expect = 8e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 82617 GATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCA 82676 || |||||||| || || |||| | ||| | || ||||| || || || || || Sbjct 584 GACTCTTTCTGGATGTTGTAATAGGGAAGATTGTGGCCATCTTCCAGCTGCTTGCCCACA 525 Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACA 82736 ||||| || ||| || || ||||| || || || ||||| || ||||| || || ||| Sbjct 524 AAGATGAGCTGTTGATGGTCCGGAGGGATGCCCTCTTTATCCTGGATCTTGGCATTGACA 465 Query 82737 TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796 ||||| || || ||| | ||||||||||| | | || ||||||| ||| ||||| Sbjct 464 TTTTCGATGGTGTCACTGGGTTCTACTTCTAGGATGATGGTCTTGCTGATCAGGGTCTTC 405 Query 82797 ACAAATATCTGCAT 82810 | || ||||||| Sbjct 404 ATGAAGGTCTGCAT 391 >seq914473 Length=1169 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 |||||||||||||| ||||| || || ||||| || || || ||| | || || || || Sbjct 702 CCTTCCTTATCTTGGATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCA 643 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||| || |||||||| |||| ||||| ||||| |||||||| Sbjct 642 AGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 599 >seq357660 Length=368 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||| || || || |||||||||| || || || ||| | ||||| |||||||||||| | Sbjct 368 TTCCAGCTGCTTACCAGCAAAGAGCAGGCTGTGCTGACCAGGAGGAATTCCTTCCTTAAC 309 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 || | ||| | |||||||||||| || | ||| ||||| || || | || || | Sbjct 308 CTGGAACTTGGTTTTTACATTTTCTATAGCATCTAAAGGTTTAACCTCAAGGGTGATGCT 249 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | | || ||||||| || |||||||| Sbjct 248 CTTCTCAATAAAAGTCTTTATGAAAATCTGCAT 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 963434125421392