Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq14274 127 2e-24 seq91636 109 5e-19 seq1351965 95.1 1e-14 seq649457 95.1 1e-14 seq1231921 93.3 4e-14 seq856667 89.7 5e-13 >seq14274 Length=203 Score = 127 bits (140), Expect = 2e-24 Identities = 140/184 (76%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 21 GGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 79 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 |||| | |||||||||||||||||||| |||||||| || || || |||||| || Sbjct 80 CCGCAAAGATGAGCCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCT 139 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 140 TCACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGG 199 Query 133642 TTTT 133645 | || Sbjct 200 TCTT 203 >seq91636 Length=227 Score = 109 bits (120), Expect = 5e-19 Identities = 127/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| | | | || || |||||||||| Sbjct 168 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 110 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| |||||||| ||||||| || Sbjct 109 CAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCT 50 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTT 133630 ||| | ||| | ||||| ||||||| || || | ||||| ||| || Sbjct 49 TGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTT 1 >seq1351965 Length=3703 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/209 (70%), Gaps = 21/209 (10%) Strand=Plus/Minus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTG 133516 || |||||| |||||||||| || ||||| || | ||| ||| | ||||| ||||| Sbjct 2167 TGCATGGTGAACTCTTTCTGGATGTTGTAGTCCGATAGGGTGAGACTA-TCCTCCAGCTG 2109 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| ||||||||| || |||||||||||||| || |||||| Sbjct 2108 CTTGCCAGCAAACATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGGATCTT 2049 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGG----TGACGGTTTTGC 133632 || |||| ||||||| || || | | ||| ||| |||| Sbjct 2048 ---------------GGCCTTGTCACTGGGCTCGACCTCAAGAGTGATTGATGGTCTTGC 2004 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661 | ||||| || || ||||| ||||||||| Sbjct 2003 CTGTCAGGGTCTTCACGAAGATCTGCATG 1975 >seq649457 Length=677 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 133459 GTATGGTGGACTCTTTCTGTATATTGTAATCGCCCA--TCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||||||| || ||||||| | | | |||| | || || ||||| Sbjct 592 GTAGGATGGACTCTTTCTGGATGTTGTAATAGGGAAGATTGTGGCCA--TCTTCCAGCTG 535 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||||||| | | |||||| | || ||||| ||||||||||| || || || |||||| Sbjct 534 CTTGCCCACAAAGATGAGCTGTTGATGGTCCGGAGGGATGCCCTCTTTATCCTGGATCTT 475 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 |||| | || | ||||| |||| || || || | | ||| ||| |||| | | Sbjct 474 GGCATTGACATTTTCGATGGTGTCACTGGGTTCTACTTCTAGGATGATGGTCTTGCTGAT 415 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || | ||| |||||||| Sbjct 414 CAGGGTCTTCATGAAGGTCTGCATG 390 >seq1231921 Length=2451 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/199 (71%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCG--TGGACGAGTCCTCGAGCTGCTTGC 133521 |||||||||||||| || ||||| || | || | || | ||||| |||||||||| Sbjct 252 GTGGACTCTTTCTGGATGTTGTAGTC--CGATAGGATGCAACCATCCTCCAGCTGCTTGC 309 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | | | || |||| ||||||||| || |||||||||||||| | |||||| || Sbjct 310 CAACAAATATCAGCC-CTGCTGGTCAGGTGGGATGCCTTCCTTATATTGGATCTTGGCCT 368 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| ||||||| || || | ||| ||| ||||| |||| | Sbjct 369 TTACATTCTTGATGGTGTCACTGGGCTCAACCTCAAGACTGATGGTCTTGCCTGTCATGG 428 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 429 TCTTCACAAAGATCTGCAT 447 >seq856667 Length=1038 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || ||||| || || ||| | ||||| ||| ||||||| Sbjct 955 GGTGGACTCTTTCTGGATGTTGTAGTCCAACAGGGTGCAACCATCCTCCAGCGGCTTGCC 896 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||| | || ||| |||||||||| || |||||| ||| Sbjct 895 GGCAAACATCAGCCTCTGCTGGGCAGGTGGGTTGCCTTCCTTATCTTGGATCTTGACCTT 836 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | | || |||||| || || | |||| ||| ||||| |||| || Sbjct 835 GACATTCTCCATAGACTCACTGGGCTGGACCTCAAGTGTGATGGTCTTGCCCATCAGGGT 776 Query 133643 TTTTACGAA 133651 || || || Sbjct 775 CTTCACAAA 767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474585511406720