Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1430035 210 2e-49 seq785234 131 2e-25 seq1328747 84.2 2e-11 >seq1430035 Length=6032 Score = 210 bits (232), Expect = 2e-49 Identities = 533/807 (66%), Gaps = 14/807 (2%) Strand=Plus/Plus Query 162172 TCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGG 162231 || || | |||||| || |||||||| ||||||||||| |||||||| || || || | Sbjct 3209 TCACCAGCTCCGAAAACACACACGGAGCGCACGTGCACCCCGCTGCATGGTGGGTAAGGA 3268 Query 162232 GCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGC 162291 || || | | || || || || |||| |||||||| || ||||||| || ||| | | Sbjct 3269 GCGCCTTTGAAAACGTCACCTTCAAAGTACTGCCACTTGACAAACCTAGCGACAGCATTC 3328 Query 162292 ATGTCGGAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTC 162351 || || || ||| ||||| | ||| || | | ||||| || || || | || Sbjct 3329 ATATCAGACAAGTCATACTTATTGCTTGAGGGGAGAGAACCAGGGACCCCAGGGATCCTT 3388 Query 162352 TGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAAC 162411 || | ||| ||||| |||| || ||||| || ||||| |||| | ||||||||||||| Sbjct 3389 TGGACAGTGGCCCAGAGGTACTCATCTGGGCTGTACGTGTCCTGTGCCCACTCCATGAAC 3448 Query 162412 TCCCTGACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTAC 162471 | || || || | ||| | || || || ||| | || | ||||| Sbjct 3449 TTTTGGATATCTTCATTCTCTAGCACATACCCTACATATTCCCTACTGACTACGAAGTAG 3508 Query 162472 GCGCTACCAGAAAACACGGG---TATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTG 162528 || || || ||||| | || | || || ||||| | ||||| || || ||| Sbjct 3509 GCACTGCCTGAAAAGAGAGGAGTTTTGAGT---GGAGGCTGTGCTTTGGCTACTCCAGTG 3565 Query 162529 TTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTA 162588 ||| | | | || || || | | | || || |||| || |||| || || Sbjct 3566 TTGGTCAGCTTCCCATCAACAATGGCATATCGTTTTTTCCATCTT----TCTTCCTTGTT 3621 Query 162589 --GACGGGTGTTCG--GTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCAC 162644 || | | ||| || || || |||| |||| |||| ||| |||| | || Sbjct 3622 CTGAGGCATCTTCTCAGTTTCCAGGTTGTTTTCACCCGAGAAGGACTTGAGCTTCCTGAC 3681 Query 162645 CATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCA 162704 || ||||| ||||| || | || ||||| | || || ||||| || | || ||||| Sbjct 3682 AATTTCTAGGTTGGTTTTGATAGGGAAGTCCATACCACAAAGATTGATCAAGTACTTCCA 3741 Query 162705 CTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCA 162764 | | || | | |||||| |||| | ||| || || || ||||| || |||||||| Sbjct 3742 GCTTGCACTCATCCTGTACAGGTCCTTCATACAATTGAGGTCAGCCTGCACCCGACTCCA 3801 Query 162765 CGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAAC 162824 || || || || || |||||| | |||| |||||||| || |||| || || | Sbjct 3802 GGATGCATAAACAACATTCTCCAGCTGGCTGGCCACAAAGACGTTACCGAAGCAGGACGC 3861 Query 162825 TATCCCCATCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTA 162884 || |||||||| || | | || || | ||| | || ||||| | |||||| Sbjct 3862 AATGCCCATCACCGCGGCTAAAAAGGATTCCTCAGTTTTTTTGTCCACGTGGATGCAGTA 3921 Query 162885 TAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTG 162944 | ||||||||| |||||||||||||| | || || | ||| || ||||| ||||| Sbjct 3922 GAAATTCTGAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATCTTGTGGTG 3981 Query 162945 TACCACGATAGAATACGCTATGGGGAA 162971 ||||| || |||||||| || || || Sbjct 3982 AACCACTATGGAATACGCAATTGGAAA 4008 >seq785234 Length=896 Score = 131 bits (144), Expect = 2e-25 Identities = 222/322 (69%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || |||| | || || || || || || |||| ||||| || | | Sbjct 486 CATAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAAACAAATGTATTGAAGAGGC 545 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| | |||||||| || |||| || |||||||| || || | | | || | || Sbjct 546 ACATGTAGCAGCCTTCATCATCCAGTGTTGTGTTCCAGAAGGTGATGCTTGTGTTCCAGA 605 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || | || ||||| ||| ||| | || | ||| ||||| ||||| || || Sbjct 606 GTCCCAGCTCGGTGATGTTTACCTTGTCTCTATATGCAGGTTGGACTACAACCCCATGGG 665 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 | | |||| | |||||||||||||| ||||| ||| || | |||||||| || || | Sbjct 666 TTTTGCTGTAAGTGGCCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAA 725 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||| | | || ||||| |||| ||| || |||||||||| || | | Sbjct 726 TCAATGGTTCCTGGGATTGTTTCAGAGAACATCGTAAGGATGCAGGTGTGTGCAGCAGCT 785 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 ||||| || || || ||||| Sbjct 786 TTCTTTCATCCTGGGTCACCAC 807 >seq1328747 Length=3365 Score = 84.2 bits (92), Expect = 2e-11 Identities = 227/342 (66%), Gaps = 8/342 (2%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | ||||||||| || || ||| || | | |||||| Sbjct 1921 ACCATCTCAGCATTGGTCTTGATGGGAAAGTCTGTCCCACAGGTGTTCAGTAGGTATTTC 1980 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || ||| ||| || | | || || | | ||||||||| || ||||| || | Sbjct 1981 CATGGCACG--GAGCTCTGGAGCAAGTCTTCCATACAGTTCAGGTCAGCCTGCACCCTGG 2038 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || || | ||| | || | || | |||||||| ||| || | Sbjct 2039 ACCAGGAAGCATAGACCACTGACACCAGCTTACTAGCTATGAAGACATTTGGGAAGCATG 2098 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 | || || || | || ||| | ||| | | || | ||| || || || || Sbjct 2099 ATACGATGGCCCTGACTGCCTGCTTGAAGGTTTCTGGG--GACTTCTGGTCCACATGGAC 2156 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 ||||||| ||||||||||| || | || | ||| | || || || |||| ||||| Sbjct 2157 ACAGTATATGTTCTGAGGGGCATACACAGCTCGCAGCAGCCTTTCAAAGTTCTCAATCTT 2216 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTC 162980 | || ||||| || ||||| || |||||||| || ||||| Sbjct 2217 CTCATGAACCACCATGGAATATGCAATGGGGAAGTCGGCCTC 2258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567860229708800