Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq785234 192 7e-44 seq712978 149 7e-31 seq1329907 113 5e-20 seq1457431 109 6e-19 seq1252348 107 2e-18 seq1153676 93.3 5e-14 >seq785234 Length=896 Score = 192 bits (212), Expect = 7e-44 Identities = 234/319 (73%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||||||||| || ||||||| |||| || || ||| | ||| || ||| Sbjct 807 GTGGTGACCCAGGATGAAAGAAAGCTGCTGCACACACCTGCATCCTTACGATGTTCTCTG 748 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | || ||||| ||||||| || |||||||||| || | | ||||| Sbjct 747 AAACAATCCCAGGAACCATTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAA 688 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| |||| |||||| ||| ||||| || ||||| || || |||| |||||| Sbjct 687 AACATGGCCACTTACAGCAAAACCCATGGGGTTGTAGTCCAACCTGCATATAGAGACAAG 628 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||| |||| |||||| ||| ||| |||||| || ||||| || || | Sbjct 627 GTAAACATCACCGAGCTGGGACTCTGGAACACAAGCATCACCTTCTGGAACACAACACTG 568 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || || || ||||||| |||||||| || || |||| |||||||| ||||| || Sbjct 567 GATGATGAAGGCTGCTACATGTGCCTCTTCAATACATTTGTTTCTGGGAAGATCTCAGGA 508 Query 171372 GTGGCCTGCCTCACCCTCT 171390 |||||||||||||||| Sbjct 507 ACAGCCTGCCTCACCCTCT 489 >seq712978 Length=772 Score = 149 bits (164), Expect = 7e-31 Identities = 187/254 (74%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || || || || | |||||| || ||||| ||||||||||| Sbjct 273 GTACAGCCCATAGTATTCCTTCACTACAACTATTTTGAAGATCACCTTAACATCACCTGC 332 Query 171453 TCTGCCAATGCCCGCCC-GCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGA 171511 ||||| | ||||||||| ||| || | || | |||||| | || ||| |||||| Sbjct 333 TCTGCAACTGCCCGCCCAGCCCCCGC-CATCTCCTGGAAGGGCACTGGTACAGGAATTGA 391 Query 171512 AAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCA 171571 || |||| |||| || | |||||| ||||| || || ||||| ||||| | |||| Sbjct 392 GAATAGTACCGAGAGTCACTTCCATTCAAATGGGACCACATCTGTCACCAGCATCCTCCG 451 Query 171572 AGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGG 171631 || ||||||||||||| |||| | || ||||| || |||||||| || | ||||||| Sbjct 452 GGTCAAAGACCCCAAGAATCAGGTTGGGAAGGAAGTGATCTGCCAGGTTTTATACCTGGG 511 Query 171632 AAATGTAACTAACT 171645 | ||| | | ||| Sbjct 512 GACTGTGATTGACT 525 >seq1329907 Length=3381 Score = 113 bits (124), Expect = 5e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||| || || | |||||||| |||||||| Sbjct 635 CTTCAGGCCCGTGATGTGTGCAATCATGTAGGTAAGGAGGGCATAGCTGGCAATGTTGAA 576 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||| ||||| || || ||||||||||| || ||||| || || ||||| | Sbjct 575 GGGCACACCCAAACCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGTTCCCCATT 516 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || || || || || ||||| || ||||| ||||| Sbjct 515 TACCACATAGAATTGACAGAGTGCATGGCAAGGAGGCAGTGCCAT 471 >seq1457431 Length=10131 Score = 109 bits (120), Expect = 6e-19 Identities = 205/297 (69%), Gaps = 12/297 (4%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||||||| | |||| || | ||||| |||| | | ||||||| Sbjct 1811 GTACTCCCTGGTGTTTATCATTGGCCTCCTGGGCAACATTGTGGTTTTGTTGATCCTCAT 1870 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||||| || |||| | || ||||| || |||| | || ||||| |||| || ||| Sbjct 1871 AAAGTACAGGAAGCTCCGAATTATGACTAATATCTACTTGCTCAACTTGGCAATTTCTGA 1930 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||||| | | ||||| |||| || |||||||||| | | |||| || Sbjct 1931 CCTGCTCTTTCTCTTCACTGTCCCATTCTGGATTCACT--ATGTTATGTGGAA----TGA 1984 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTAT-AGTGGGCCTTTGCA--ACGTGGCACT 8846 |||| | ||| ||||||||||| | || | |||| ||| | || | || | Sbjct 1985 ATGGGGTTTTGGCCATCACATGTGTAAACTAATCACTGGG---TTGTATTACCTTGCCTT 2041 Query 8847 GTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903 |||||||||| || | || ||||||||| |||| | |||||||| || || |||| Sbjct 2042 GTACAGCGAAATCTTTTTCATCATCCTGCTGACAATTGACAGGTACCTGGCCATTGT 2098 >seq1252348 Length=2602 Score = 107 bits (118), Expect = 2e-18 Identities = 122/162 (75%), Gaps = 15/162 (9%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 ||||||||||||||||||| |||| || || ||||| ||||||||| ||| ||| |||| Sbjct 1101 AGGGTTACTTGGGTTGCCAAACCTTATCGGAAATGATCCAGTTTTACCTGGTGGAAGTGA 1042 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| |||| ||| ||||| || || ||||||||| | |||| Sbjct 1041 TGCCCCAGGC--AGAA----AGC------CATGGCCCAGAAATCAAGGAGCATTTGAACT 994 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGC 178392 | ||||| || ||||| |||||||| || ||||| || || Sbjct 993 CCCTGGGAGAGAAGCTGAAGACCCTCAG---GAGGCAGCTGC 955 >seq1153676 Length=1991 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || ||||| || ||||||||||| || || ||||| |||||||| || || || |||| Sbjct 1598 GCTCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTCTCCTTCCTGTC-GTGC 1656 Query 147343 -GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401 ||||| ||| | | | ||| || ||||||| | ||| ||||| || | |||||| Sbjct 1657 AGAGAATCCCAGGCTGTCCAAAAAATCTCGGGACCCATTGGCATCCCATATTCTCACTCC 1716 Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGA 147439 ||||| ||| || || |||| | ||||||||| ||| Sbjct 1717 CTTGGAGGACAGTTCTTTAGCATTTGTGGAGCCCTGGA 1754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572823823219200