Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq91636 104 2e-17 seq14274 91.5 1e-13 seq1262044 84.2 2e-11 >seq91636 Length=227 Score = 104 bits (114), Expect = 2e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 162 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 103 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || |||||||||| ||||||| ||| | | | Sbjct 102 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATT 43 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 | | ||||| || | || ||||||| ||||| || || Sbjct 42 CTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTT 1 >seq14274 Length=203 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | || || | || ||||||||||| |||||||| Sbjct 27 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAA 86 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||||||| | || | || ||| || ||| |||||| ||||| | Sbjct 87 GATGAGCCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTT 146 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 | | ||||| || | ||||| |||| ||||| || || || |||| Sbjct 147 CTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCA 196 >seq1262044 Length=2680 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||||||||||||||| || | ||| ||||| | || ||||| |||||||| ||||| | Sbjct 1662 CCTTTTGAATGTTGTAGTCAGACAAAGTTCGGCCATCTTCCAGTTGCTTACCAGCAAAGA 1603 Query 35607 TCAACCGCTGCTGGTCCGAAGGAA 35630 ||| || ||||||||| | ||||| Sbjct 1602 TCAGCCTCTGCTGGTCAGGAGGAA 1579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 442554625690240