Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1102849 123 3e-23 seq866491 123 3e-23 seq1396778 104 3e-17 seq1023260 102 1e-16 seq625382 96.9 5e-15 seq1424254 86.0 8e-12 >seq1102849 Length=1762 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||| || || || ||||| |||||||| || ||||||||||| ||||| | || Sbjct 787 TGGAATTCTCCCGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 846 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 || ||||| |||||||| ||||||||||| ||||| ||||| || || | | ||||||| Sbjct 847 TCGTTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTA 906 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 907 TTTCTTATACCAT 919 >seq866491 Length=1059 Score = 123 bits (136), Expect = 3e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| |||||||| |||||||| || |||||| ||| | || || || ||||| || | Sbjct 573 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 514 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | ||| || ||||||||||||||||| ||||| || || ||||| || | || | | | Sbjct 513 TTAACGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 454 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 |||||| |||||||| | ||||||| | | || || | ||||| |||| Sbjct 453 TTTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 403 >seq1396778 Length=4658 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | |||||||| || ||||| ||||| || ||||||||||| ||| Sbjct 2570 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTTG 2629 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||||||| || | || ||||| | |||||||| | | || | ||||||| Sbjct 2630 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 2689 Query 70111 ATATGCTGAGGTCGTTC 70127 |||||||| |||| ||| Sbjct 2690 ATATGCTGTGGTCTTTC 2706 >seq1023260 Length=1473 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||| || || || | ||||| || || |||||||| ||||| || || | ||| || Sbjct 213 TCATCCCTGCTGATCAGCTCGTTTGAGAAAGTGAGTCCTGGCATGAGGCCTCTCTTCTTC 154 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||| || ||||| ||||| ||||||||||| || || || || Sbjct 153 AGCCAGAATATAGCAGCAAACGACCCAGAGAAGAAAATGCCTTCTACGGCAGCGAAGGCC 94 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 93 ACCACTCTTTCCCC 80 >seq625382 Length=644 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| || || || | || || || ||||||| | Sbjct 457 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 398 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | ||||||||||| || | ||||| | || || ||| | || ||||| | ||||| | Sbjct 397 TGGCATAGTCAGGGTGCTTCGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCA 338 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || || || |||| || ||||| || |||||||||| Sbjct 337 GTTCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCATGG 290 >seq1424254 Length=5701 Score = 86.0 bits (94), Expect = 8e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || ||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||| Sbjct 2297 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAATGAC 2238 Query 69577 CA 69578 || Sbjct 2237 CA 2236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 674354442625920