Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1304636 105 5e-18 seq1329907 95.1 9e-15 seq875055 93.3 3e-14 seq1391428 91.5 1e-13 seq856530 91.5 1e-13 >seq1304636 Length=3081 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||||||| | |||| || || ||||| ||||| || ||||||||||| ||||| Sbjct 569 CAAGAAGTTCAAATTACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAAC 628 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| || ||||||||||| || || || || ||||| |||||| Sbjct 629 ATACATTCTGAGATGTACAGTCTCCTTATTGACACTTACATTAAAGAT 676 >seq1329907 Length=3381 Score = 95.1 bits (104), Expect = 9e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| |||| ||||| ||| | ||||| || || || ||||| ||||||| Sbjct 469 TGATGGCACTGCCTCCTTGCCATGCACTCTGTCAATTCTATGTGGTAAATGGGGAACTGT 528 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | || || || ||||| || ||||| | || || || || ||||| || | Sbjct 529 CTTGCCAACTTTACCAGAGGTCAGGAGATATGGGTTTGGGTGTGCCCTTCAACATTGCCA 588 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | ||||| || || || || |||||||||||| Sbjct 589 GCTATGCCCTCCTTACCTACATGATTGCACAC 620 >seq875055 Length=1077 Score = 93.3 bits (102), Expect = 3e-14 Identities = 114/156 (73%), Gaps = 6/156 (4%) Strand=Plus/Plus Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTT------CT 19602 |||||||| || || | |||||| | || || ||||| ||||| ||||| || Sbjct 688 TTGCACATCATCATCTTTGATGAAATCGATGCCATCTGCAAGCAGAGAGGGAGCATGGCT 747 Query 19603 GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 ||| | |||||| ||||||||||||||||| || || ||||| || | |||||||| Sbjct 748 GGTAGCACTGGAGTTCATGACACTGTTGTCAACCAGCTGCTGTCCAAGATTGACGGTGTC 807 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACT 19698 | || ||||| || || | |||||||| ||| || Sbjct 808 GAGCAGCTGAACAACATCCTGGTTATTGGTATGTCT 843 >seq1391428 Length=4510 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| |||||||| ||||| |||||||| || ||||| | Sbjct 2797 AAAATCCCTTTGATTTTATGGAAAACATTTCGTTAGAAGGGAAAACAAATTTCTTTGAGA 2738 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 |||| ||| || |||||||| | | |||||| Sbjct 2737 AACGAGTTTCTGAGTATCAGCGCTTTGCAGTCATG 2703 >seq856530 Length=1037 Score = 91.5 bits (100), Expect = 1e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||||||| | |||||||| || || | |||||| ||| ||||||| ||| ||||||||| Sbjct 105 GGTTTGTCATCTTTCCAATCCAGTACCCTGACATCTGGAAAATGTATAAACAAGCACAGG 164 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || || |||||||||||||| || Sbjct 165 CATCTTTCTGGACAGCAGAAGAGGT 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 390373459278640