Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq649943 86.0 8e-12 seq1424254 82.4 9e-11 >seq649943 Length=678 Score = 86.0 bits (94), Expect = 8e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 122370 ATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 122429 ||| || || || ||||||||||||||||| ||||| || || || |||||||||||| Sbjct 557 ATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATGTTTTCCAT 616 Query 122430 AAAGTCAAATGGATTCT 122446 |||||||||||||||| Sbjct 617 GAAGTCAAATGGATTCT 633 >seq1424254 Length=5701 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || || ||||||| ||||||||||| | |||| | || || || || Sbjct 3867 CTCATCTTTGCTGGTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTTCC 3808 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| |||||| || || | ||| |||||||||||||| || || || Sbjct 3807 CAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGAGTGCC 3748 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 || || ||||| || | || || || | ||||| Sbjct 3747 TGTTTCTGTCTGAGACTCGATGATGGCATACCAAA 3713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616553710348800