Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1424254 82.4 9e-11 seq1304636 82.4 9e-11 >seq1424254 Length=5701 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 104888 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGAC 104947 ||| | || || || ||||||| || || || || || ||||||||||| |||||||| Sbjct 3715 TGGTATGCCATCATCGAGTCTCAGACAGAAACAGGCACTCCATACATGCTCTACAAAGAT 3774 Query 104948 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGT 105007 ||||||| | ||||| || || |||| |||| ||||| | ||| || ||| Sbjct 3775 TCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACCATCAAATGCAGCAACCTGTGT 3834 Query 105008 ACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 |||||||| | || | ||| |||||||||| Sbjct 3835 ACAGAAATAGTAGAGTATACCAGCAAAGATGAG 3867 >seq1304636 Length=3081 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGG 94886 || ||||| ||||||||||| || ||||| ||| | || | |||||||||||||| || Sbjct 1773 GTGGAGGGGATCTTCTTCTCGGGCTCCTT-TGCATCAATATTCTGGCTCAAGAAGCGGGG 1831 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || ||||| || ||| ||||||||| ||||||||| Sbjct 1832 ACTGATGCCCGGCCTCACCTTCTCCAATGAGCTTATC 1868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572600775662720