Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq91636 131 2e-25 seq1231921 125 8e-24 seq14274 116 4e-21 seq686906 104 3e-17 seq1023260 84.2 2e-11 seq914473 84.2 2e-11 >seq91636 Length=227 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27436 AAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATT 27495 ||||| || || || ||||| ||| | |||| | ||| | ||| | ||||| || || Sbjct 1 AAGACCATCACCCTGGAGGTCGAGCCCAGTGACACCATCGAGAATGTCAAGGCAAAGATC 60 Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||| | || || |||||||| ||||| || Sbjct 61 CAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTG 120 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 || |||| || ||||| | ||||| || |||| ||||| ||||| || || || ||| Sbjct 121 GAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTC 180 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| || | ||||| Sbjct 181 CTGCGCCTCAGGGGTGG 197 >seq1231921 Length=2451 Score = 125 bits (138), Expect = 8e-24 Identities = 152/206 (74%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||| || | ||||||||||||| | || Sbjct 447 ATGCAGATCTTTGTGAAGACCATGACAGGCAAGACCATCAGTCTTGAGGTTGAGCCCAGT 388 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| ||| | ||||| || || || | ||||| || || || || |||||| Sbjct 387 GACACCATCAAGAATGTAAAGGCCAAGATCCAATATAAGGAAGGCATCCCACCTGACCAG 328 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||| ||| ||||| || ||||||| | | | |||| | ||||| || Sbjct 327 CAG-GGCTGATATTTGTTGGCAAGCAGCTGGAGGATGGTTGCATCCTATCGGACTACAAC 269 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| || || |||||| | || || Sbjct 268 ATCCAGAAAGAGTCCACTTTGCACCT 243 >seq14274 Length=203 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 27421 AAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAAT 27480 ||||| || ||||||||||| || || || || || ||| | |||| | ||| | || Sbjct 203 AAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAGAAC 144 Query 27481 TTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTT 27540 ||||||| || || ||||| || ||||| || || || ||||||||||| || || ||| Sbjct 143 GTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGACCAGCAGCGGCTCATCTTT 84 Query 27541 GCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCC 27600 || || ||||| || || |||| || || || | || || || |||| ||||| ||| Sbjct 83 GCGGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAGGAGTCC 24 Query 27601 ACTCTTCATCTAGT 27614 || || || || || Sbjct 23 ACCCTCCACCTGGT 10 >seq686906 Length=732 Score = 104 bits (114), Expect = 3e-17 Identities = 158/223 (71%), Gaps = 9/223 (4%) Strand=Plus/Minus Query 27408 GCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG- 27466 ||| || || | ||| ||||||| || || || || || || |||||||| || || Sbjct 408 GCAGATTTTCATGAAGGCGCTTACAGGGAAAACCATCACACTGGAGGTTGAA-CACTTGG 350 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 | | || |||| | |||| || || ||||| ||||| ||||||||||| ||||||| Sbjct 349 ACATGATAAAAAATATAAAGGTCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGC 290 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 || | || || ||||||||||| || |||| |||| | | || || || Sbjct 289 AGAGGCTGAT-------GGTAAGCAACTGGAAGATGGCGGTACTTTGTCTGAGTACAACA 237 Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGG 27629 | |||||||||||||| ||| |||| || ||| | ||||| || Sbjct 236 TTCAAAAGGAATCCACCCTTAATCTTGTGTTGAGACTTCGTGG 194 >seq1023260 Length=1473 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 || ||||| |||||||| |||||||| || | |||| |||||||| || ||| | ||| Sbjct 107 GTAGAAGGCATTTTCTTCTCTGGGTCGTTTGCTGCTATATTCTGGCTGAAGAAGAGAGGC 166 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 || |||||||| || | || || |||||||||||| Sbjct 167 CTCATGCCAGGACTCACTTTCTCAAACGAGCTGATC 202 >seq914473 Length=1169 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||||||||| ||| | || Sbjct 599 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 658 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| | |||||||| || || || ||||| || Sbjct 659 GACACCATCGAGAATGTCAAGGCTAAGATCCAAGATAAGGAAGG 702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559887064943360