Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq1430035 149 8e-31 >seq1430035 Length=6032 Score = 149 bits (164), Expect = 8e-31 Identities = 262/375 (70%), Gaps = 10/375 (3%) Strand=Plus/Minus Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729 |||||| ||| |||||||| | ||||| || || || || || ||| | |||||||| Sbjct 4033 GCCCCTTAGCAAAGAAGAGGTAGGCTTTCCAATTGCGTATTCCATAGTGGTTCACCACAA 3974 Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789 ||| || ||| | || | ||||||||||||||||| || ||||| |||||||| | Sbjct 3973 GATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCAT 3914 Query 13790 CCACGTGGACTCCAAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG 13847 |||||||||| || | | || | || | ||| | || || ||| || Sbjct 3913 CCACGTGGACAAAAAAACTGAGGAATCCTTTTTAGCCGCG--GTGATGGGCATTGCGTCC 3856 Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 |||||| |||||| ||||| || |||| | | || || || | ||||||||| Sbjct 3855 TGCTTCGGTAACGTCTTTGTGGCCAGCCAGCTGGAGAATGTTGTTTATGCATCCTGGAGT 3796 Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGAC-GCCTCCCCCGT-CAAG-TGG 13964 || |||||||| ||||||| || ||| ||||||| || | | || |||| ||| Sbjct 3795 CGGGTGCAGGCTGACCTCAATTGTATGAAGGACCTGTACAGGAT---GAGTGCAAGCTGG 3739 Query 13965 AGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTG 14024 | |||| || |||| || || || ||||||||||| |||| |||||||| || || || Sbjct 3738 AAGTACTTGATCAATCTTTGTGGTATGGACTTCCCTATCAAAACCAACCTAGAAATTGTC 3679 Query 14025 CGGGCGCTGAAGGCC 14039 || ||| ||| || Sbjct 3678 AGGAAGCTCAAGTCC 3664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 646699687137280