Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1329907 123 2e-23 seq1153676 89.7 5e-13 >seq1329907 Length=3381 Score = 123 bits (136), Expect = 2e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| || |||||||| || || || ||||| | ||||| |||||||| || | ||| Sbjct 459 GATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCACTCTGTCAATTCTATGTGGTAAAT 518 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 ||||| ||||| ||||| || || || | || ||||| ||||| || || ||||| ||| Sbjct 519 GGGGAACTGTCTTGCCAACTTTACCAGAGGTCAGGAGATATGGGTTTGGGTGTGCCCTTC 578 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || || || || || || |||||||| || || Sbjct 579 AACATTGCCAGCTATGCCCTCCTTACCTACATGATTGCACA 619 Score = 123 bits (136), Expect = 2e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| || || || || || || ||||||||||| ||||| || || ||| Sbjct 619 TGTGCAATCATGTAGGTAAGGAGGGCATAGCTGGCAATGTTGAAGGGCACACCCAAACCC 560 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || ||||| || | || || || ||||| ||||| |||||||| | || |||||||| Sbjct 559 ATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGTTCCCCATTTACCACATAGAATTGA 500 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||| | ||||| || || || |||||||| || ||||| Sbjct 499 CAGAGTGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATC 459 >seq1153676 Length=1991 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| |||||||||||||| || || || ||||||| ||| || |||| Sbjct 1592 TAGTCTGCTCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTCTCCTTCCTGT 1651 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | | ||| ||| | |||||| ||| ||||| ||||| | || ||||| || || Sbjct 1652 CGTGCAGAGAATCCCAGGCTGTCCAAAAAATCTCGGGACCCATTGGCATCCCATATTCTC 1711 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || || || || | || |||| Sbjct 1712 ACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGG 1745 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || || || || ||| ||| |||| || ||||| || | ||||| | Sbjct 1745 CCACAAATGCTAAAGAACTGTCCTCCAAGGGAGTGAGAATATGGGATGCCAATGGGTCCC 1686 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||| ||| |||||| | ||| ||| | | || |||| || ||| ||||||| || | Sbjct 1685 GAGATTTTTTGGACAGCCTGGGATTCTCTGCACGACAGGAAGGAGACCTGGGCCCAGTTT 1626 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || |||||||||||||| ||||| || || || Sbjct 1625 ATGGTTTCCAGTGGAGACATTTTGGAGCAGACTA 1592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440069687420160