Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq785234 192 5e-44 seq1078183 122 7e-23 seq1329907 93.3 3e-14 >seq785234 Length=896 Score = 192 bits (212), Expect = 5e-44 Identities = 184/236 (78%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1290 ATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAAT 1349 ||||| |||||||| ||| ||||| ||||||||||||||||||||||| || || Sbjct 726 ATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAAAACATGGCCACTTACAGCAAA 667 Query 1350 GACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGA 1409 ||| |||||||| || || || ||||| | ||| || | ||||| || ||||| ||| Sbjct 666 ACCCATGGGGTTGTAGTCCAACCTGCATATAGAGACAAGGTAAACATCACCGAGCTGGGA 607 Query 1410 CTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAG 1469 || ||||||| || |||||||||||||||||| ||||||||||||| ||||||| | Sbjct 606 CTCTGGAACACAAGCATCACCTTCTGGAACACAACACTGGATGATGAAGGCTGCTACATG 547 Query 1470 TGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 || | || || || |||| ||||||||||| ||||||| || || || ||||| Sbjct 546 TGCCTCTTCAATACATTTGTTTCTGGGAAGATCTCAGGAACAGCCTGCCTCACCCT 491 >seq1078183 Length=1664 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || || |||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 397 GTGGTGGAGGAACTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 456 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| || | || | |||| || |||||| Sbjct 457 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACAGGGAGATGTCACCCCTGGTGGACAAC 516 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 517 ATCGCCCTGTGGATGACTGA 536 >seq1329907 Length=3381 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| ||||||||||| || | | |||||||| | || || || Sbjct 631 AGGCCCGTGATGTGTGCAATCATGTAGGTAAGGAGGGCATAGCTGGCAATGTTGAAGGGC 572 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 ||||||| |||||| ||| |||| |||||||| | ||||||||| || ||||| ||| | Sbjct 571 ACACCCAAACCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGTTCCCCATTTACC 512 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| || |||| | || || |||||||| |||| Sbjct 511 ACATAGAATTGACAGAGTGCATGGCAAGGAGGCAGTGCCAT 471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407090953984192