Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq91636 149 1e-30 seq14274 149 1e-30 seq1231921 134 3e-26 seq649457 122 2e-22 seq686906 114 3e-20 seq856667 104 5e-17 seq1269963 96.9 8e-15 seq1351965 91.5 3e-13 seq591207 89.7 1e-12 seq357660 86.0 1e-11 seq1423532 84.2 5e-11 >seq91636 Length=227 Score = 149 bits (164), Expect = 1e-30 Identities = 142/182 (78%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 182 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 123 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| || | || ||||||||| Sbjct 122 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 63 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || || || |||||||||||| | || ||||| || ||||| ||| Sbjct 62 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 3 Query 211083 TT 211084 || Sbjct 2 TT 1 >seq14274 Length=203 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| ||||| | ||| || | |||||| Sbjct 7 AGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 66 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || || || ||||| || || | || || || ||| Sbjct 67 TCCAGCTGCTTGCCCGCAAAGATGAGCCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCC 126 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| |||||||||||| | || || || || ||||| ||| Sbjct 127 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTC 186 Query 211083 TTTCCCGTGAGAGTCTT 211099 || || || || ||||| Sbjct 187 TTGCCGGTCAGGGTCTT 203 >seq1231921 Length=2451 Score = 134 bits (148), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 ||||| | |||||||||||| |||||||| || |||| ||| | | ||||| |||||| Sbjct 243 AGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCCGATAGGATGCAACCATCCTCCAGC 302 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 |||||||| | || || | || || |||||||| || | |||||||| | |||||| Sbjct 303 TGCTTGCCAACAAATATCA-GCCCTGCTGGTCAGGTGGGATGCCTTCCTTATATTGGATC 361 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || || || || | |||||||||| | |||||||| ||| |||| ||||| || Sbjct 362 TTGGCCTTTACATTCTTGATGGTGTCACTGGGCTCAACCTCAAGACTGATGGTCTTGCCT 421 Query 211089 GTGAGAGTCTTTACAAACACCTGCATTTT 211117 || | ||||| ||||| | |||||| || Sbjct 422 GTCATGGTCTTCACAAAGATCTGCATATT 450 >seq649457 Length=677 Score = 122 bits (134), Expect = 2e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||| | || |||||||||| |||||||| |||| | ||| | |||||| Sbjct 602 AGGACCAGGCGTAGGATGGACTCTTTCTGGATGTTGTAATAGGGAAGATTGTGGCCATCT 543 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| | ||||| || |||| ||||| ||||| | || || || ||| Sbjct 542 TCCAGCTGCTTGCCCACAAAGATGAGCTGTTGATGGTCCGGAGGGATGCCCTCTTTATCC 483 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||||||||||||||| | ||| || || || |||| ||| Sbjct 482 TGGATCTTGGCATTGACATTTTCGATGGTGTCACTGGGTTCTACTTCTAGGATGATGGTC 423 Query 211083 TT 211084 || Sbjct 422 TT 421 >seq686906 Length=732 Score = 114 bits (126), Expect = 3e-20 Identities = 168/237 (71%), Gaps = 8/237 (3%) Strand=Plus/Plus Query 210887 ATTTCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGC 210946 ||| | ||||||||| | ||||| | ||| ||||| || ||||| ||||| || || | Sbjct 190 ATTGCCACGAAGTCTCAACACAAGATTAAGGGTGGATTCCTTTTGAATGTTGTACTCAGA 249 Query 210947 AAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 | || | ||||||||||| ||||| || || || | || ||||||||||| Sbjct 250 CAAAGTACCGCCATCTTCCAGTTGCTTACC-------ATCAGCCTCTGCTGGTCAGGAGG 302 Query 211007 AACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAAC 211066 || ||||||||| ||||||||||| || | |||| || |||| || |||||| Sbjct 303 AATTCCTTCCTTATCCTGGATCTTGACCTTTATATTTTTTATCATGTCCAAGTGTTCAAC 362 Query 211067 CTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT-TTTATGGT 211122 ||| || ||||| || || || || || | ||| | || | |||| | || ||||| Sbjct 363 CTCCAGTGTGATGGTTTTCCCTGTAAGCGCCTTCATGAAAATCTGCCTCTTCATGGT 419 >seq856667 Length=1038 Score = 104 bits (114), Expect = 5e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||||||||| |||||||| || ||| ||||| | ||||| |||||| ||||||| Sbjct 954 GTGGACTCTTTCTGGATGTTGTAGTCCAACAGGGTGCAACCATCCTCCAGCGGCTTGCCG 895 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || || | || ||| |||| || |||||||| || |||||||| || Sbjct 894 GCAAACATCAGCCTCTGCTGGGCAGGTGGGTTGCCTTCCTTATCTTGGATCTTGACCTTG 835 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || || || | ||| | | ||||| || ||||| ||||| ||| | || ||| Sbjct 834 ACATTCTCCATAGACTCACTGGGCTGGACCTCAAGTGTGATGGTCTTGCCCATCAGGGTC 775 Query 211098 TTTACAAACACCTGC 211112 || ||||| || ||| Sbjct 774 TTCACAAAGACATGC 760 >seq1269963 Length=2748 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210908 AAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAG 210967 ||| | ||| |||| || ||||| ||||| || | | | || |||||||||||||| Sbjct 447 AAGATAAAGGGTGGGCTTCTTTTGAATGTTGTAGTAAGACAAAGTACTTCCATCTTCCAG 506 Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 |||| || || |||| || | || || |||||| || |||||||| || |||||| Sbjct 507 ATGCTCACCAGCAAAGAGCAGCCTCTGCTGAGCAGGAGAAATTCCTTCCTCGTGCTGGAT 566 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 ||| || || || || || | || | | |||||||| ||| ||||| || || || Sbjct 567 CTTGGCCTTTACATTCTCTATAGCATCTGGGGGTTCAACCTTGAGTGTGATAGTTTTCCC 626 Query 211088 CGTGAGAGTCTTTACAAA 211105 | | || ||||| || || Sbjct 627 CATAAGGGTCTTCACGAA 644 >seq1351965 Length=3703 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | || ||||| | ||| ||||||| |||||||| || |||| ||||| Sbjct 2186 ACGAAGGCGGGGCACCAGGTGCATGGTGAACTCTTTCTGGATGTTGTAGTCCGATAGGGT 2127 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| |||||||||||||| || || || || | || |||||||| || | || Sbjct 2126 GAGACTATCCTCCAGCTGCTTGCCAGCAAACATCAGCCTCTGCTGGTCAGGTGGGATGCC 2067 Query 211013 TTCCTTGTCCTGGATCTT 211030 |||||| || |||||||| Sbjct 2066 TTCCTTATCTTGGATCTT 2049 >seq591207 Length=599 Score = 89.7 bits (98), Expect = 1e-12 Identities = 117/164 (71%), Gaps = 11/164 (7%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| | ||||||||||| |||||| | ||||| | ||| || | ||||| Sbjct 532 AGGACCAGGTGCAAGGTGGACTCTTTCTGGATGCTGTAATCAGAAAGAGTGCGGTCATCT 473 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGA-----------GGAACTC 211011 |||||| |||||||||| | ||| || | |||| |||||| ||| | Sbjct 472 TCCAGCGGCTTGCCTGCAATGATGAGTCACTGTTTGTCAGGTCAGGGAGGAGGGGATATA 413 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055 | | || |||||||||||| |||| ||| | |||||||||| Sbjct 412 CCACTTTATCCTGGATCTTTGCCTTCATGTTCTTGATGGTGTCA 369 >seq357660 Length=368 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||||||||||| || || |||| |||| || || ||||||||| ||||||||| | Sbjct 368 TTCCAGCTGCTTACCAGCAAAGAGCAGGCTGTGCTGACCAGGAGGAATTCCTTCCTTAAC 309 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTC-AGAGCTTTCAACCTCGAGAGTGATCG 211080 ||||| ||| ||| || ||||| || | || | || ||| |||||| || ||||| Sbjct 308 CTGGAACTTGGTTTTTACATTTTCTATAGCATCTAAAGGTTT-AACCTCAAGGGTGATGC 250 Query 211081 TCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| | | | |||||||| || | |||||| Sbjct 249 TCTTCTCAATAAAAGTCTTTATGAAAATCTGCAT 216 >seq1423532 Length=5667 Score = 84.2 bits (92), Expect = 5e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||||||||||| || || |||| |||| || || ||||||||| | ||||||| | Sbjct 5667 TTCCAGCTGCTTACCAGCAAAGAGCAGGCTGTGCTGACCAGGAGGAATTTCTTCCTTAAC 5608 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||| ||| ||| | ||||| || | || || || |||||| || ||||| | Sbjct 5607 CTGGAACTTGGTTTTTAAATTTTCTATAGCATCTGAAGGTTTAACCTCAAGGGTGATGCT 5548 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || | | |||||||| || | |||||| || Sbjct 5547 CTTCTCCATAAAAGTCTTTATGAAAATCTGCATGTT 5512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1137437008620720