Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq14274 127 5e-24 seq91636 123 6e-23 seq1353456 104 5e-17 seq649457 100 7e-16 seq686906 91.5 3e-13 >seq14274 Length=203 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| ||||| || || |||| |||||||| | | ||| | |||||| Sbjct 7 AGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 66 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || |||||||| || || || || || || Sbjct 67 TCCAGCTGCTTGCCCGCAAAGATGAGCCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCC 126 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 127 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTC 186 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 187 TTGCCGGTCA 196 >seq91636 Length=227 Score = 123 bits (136), Expect = 6e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || ||||| || || |||| ||||| |||| || || | ||||| Sbjct 183 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 124 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || ||||| || || || || |||||||| Sbjct 123 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 64 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| ||| ||||||||||| || || || || | ||||| || Sbjct 63 CTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGT 4 Query 225681 CTT 225683 ||| Sbjct 3 CTT 1 >seq1353456 Length=3728 Score = 104 bits (114), Expect = 5e-17 Identities = 131/179 (73%), Gaps = 1/179 (1%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| | | ||| ||||| | || || || | |||||||| ||||||||| | |||||| Sbjct 246 CAAATCTCCAATGTTATAGTAACAGCCCACACATTTGTTATAATTTTCTTTATAGTTATG 305 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || | || || || || || ||||| ||| | || || ||| ||||| | |||||| Sbjct 306 CCTATAATAATTGGTGGATTTGGAAACTGACTGGTACCACTAAAAATTGGATCCCCTGAT 365 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || || ||||| | | ||||||||||| || ||||||||||| || || || || || Sbjct 366 ATAGCATTTCCCTGAGTAAACAATATAAGCTTCTGATTACTACC-CCATCATTTTTACT 423 >seq649457 Length=677 Score = 100 bits (110), Expect = 7e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||| | || |||| ||||| |||| ||||||| || | | | |||||| Sbjct 602 AGGACCAGGCGTAGGATGGACTCTTTCTGGATGTTGTAATAGGGAAGATTGTGGCCATCT 543 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || | ||||| || |||| ||||| || || || || || || || Sbjct 542 TCCAGCTGCTTGCCCACAAAGATGAGCTGTTGATGGTCCGGAGGGATGCCCTCTTTATCC 483 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || ||| |||||||||||| || ||| || |||| |||| ||| Sbjct 482 TGGATCTTGGCATTGACATTTTCGATGGTGTCACTGGGTTCTACTTCTAGGATGATGGTC 423 Query 225682 TTGCCCGTCAAAGTTTTTATGAA 225704 |||| ||| || || ||||| Sbjct 422 TTGCTGATCAGGGTCTTCATGAA 400 >seq686906 Length=732 Score = 91.5 bits (100), Expect = 3e-13 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| ||||| | || |||||||| ||||| | ||||| || | |||||| Sbjct 196 ACGAAGTCTCAACACAAGATTAAGGGTGGATTCCTTTTGAATGTTGTACTCAGACAAAGT 255 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| || || || | || ||||| || ||||| || Sbjct 256 ACCGCCATCTTCCAGTTGCTTACC-------ATCAGCCTCTGCTGGTCAGGAGGAATTCC 308 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| | | || || |||| || ||| || || | Sbjct 309 TTCCTTATCCTGGATCTTGACCTTTATATTTTTTATCATGTCCAAGTGTTCAACCTCCAG 368 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT-TTTATGGT 225721 ||||| || || || || | | || ||||| | ||| | || ||||| Sbjct 369 TGTGATGGTTTTCCCTGTAAGCGCCTTCATGAAAATCTGCCTCTTCATGGT 419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1170190898876832