Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1329907 120 2e-22 seq1153676 87.8 1e-12 >seq1329907 Length=3381 Score = 120 bits (132), Expect = 2e-22 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| || ||||| | |||||||| ||||| |||||| Sbjct 631 AGGCCCGTGATGTGTGCAATCATGTAGGTAAGGAGGGCATAGCTGGCAATGTTGAAGGGC 572 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || | ||||| || |||||||||||||| || ||||| || || || || | | Sbjct 571 ACACCCAAACCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGTTCCCCATTTACC 512 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 || || || ||||| | |||||||| ||||| || ||||| || Sbjct 511 ACATAGAATTGACAGAGTGCATGGCAAGGAGGCAGTGCCATCAG 468 >seq1153676 Length=1991 Score = 87.8 bits (96), Expect = 1e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC-TCGAA 30075 ||||| ||||||||||| || || || || ||||||||||| || | | |||| ||| Sbjct 1604 AAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTCTCCTTCCTGTC-GTGCAGAGAA 1662 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| |||||||||| |||| ||| || ||||| ||||| || | || ||||| Sbjct 1663 TCCCAGGCTGTCCAAAAAATCTCGGGACCCATTGGCATCCCATATTCTCACTCCCTTGGA 1722 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||| || ||||| | |||||||| || Sbjct 1723 GGACAGTTCTTTAGCATTTGTGGAGCC 1749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398925499717408