Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1023260 116 3e-21 seq1391428 89.7 4e-13 seq1304636 86.0 5e-12 >seq1023260 Length=1473 Score = 116 bits (128), Expect = 3e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| || ||||| ||||| ||||| || || || | ||| ||||| | |||||||| | Sbjct 215 CTTCATCCCTGCTGATCAGCTCGTTTGAGAAAGTGAGTCCTGGCATGAGGCCTCTCTTCT 156 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | ||||| |||||||| ||||| |||||||| ||||| |||||||||||||| || || | Sbjct 155 TCAGCCAGAATATAGCAGCAAACGACCCAGAGAAGAAAATGCCTTCTACGGCAGCGAAGG 96 Query 4690 CTAC 4693 | || Sbjct 95 CCAC 92 >seq1391428 Length=4510 Score = 89.7 bits (98), Expect = 4e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||||||||| |||||| Sbjct 2719 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTTCC 2778 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 2779 ATAAAATCAAAGGGATT 2795 >seq1304636 Length=3081 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || || ||||| ||||||||||| ||||| || ||| Sbjct 675 TCTTTAATGTAAGTGTCAATAAGGAGACTGTACATCTCAGAATGTATGTTTTCCATGGCA 616 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 || || || || || || || | || ||||| | ||||||||| | | ||||| Sbjct 615 ATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAATTTGAACTTCTTGGCTAAATC 561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419439710648624