Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1329907 104 2e-17 seq1153676 100 2e-16 >seq1329907 Length=3381 Score = 104 bits (114), Expect = 2e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| || ||||| | |||||||| ||||| ||||| Sbjct 631 AGGCCCGTGATGTGTGCAATCATGTAGGTAAGGAGGGCATAGCTGGCAATGTTGAAGGGC 572 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || | ||||| || || ||||||||||| || || || || || || |||| Sbjct 571 ACACCCAAACCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGTTCCCCATTTACC 512 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 || || || ||||| | || ||||| ||||| || ||||| ||| Sbjct 511 ACATAGAATTGACAGAGTGCATGGCAAGGAGGCAGTGCCATCAGG 467 >seq1153676 Length=1991 Score = 100 bits (110), Expect = 2e-16 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| |||||||| ||||| ||||| ||||| || || || || |||||||| Sbjct 1582 CATATCTTTGTAGTCTGCTCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTC 1641 Query 27549 TCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 ||| || | | |||| ||| ||| |||||||||| |||| ||| || ||||| | Sbjct 1642 TCCTTCCTGTC-GTGCAGAGAATCCCAGGCTGTCCAAAAAATCTCGGGACCCATTGGCAT 1700 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||| || | || ||||| ||| || ||||| | |||||||| || Sbjct 1701 CCCATATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGAGCC 1749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362922698090768