Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1102849 127 3e-24 seq866491 120 4e-22 seq1396778 116 5e-21 seq1023260 102 1e-16 seq1424254 95.1 2e-14 seq625382 93.3 6e-14 seq856530 84.2 3e-11 >seq1102849 Length=1762 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 787 TGGAATTCTCCCGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 846 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 || || || |||| ||| ||||||||||||||||| ||||| || || | | ||||||| Sbjct 847 TCGTTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTA 906 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 907 TTTCTTATACCAT 919 >seq866491 Length=1059 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| ||||| || || |||||| ||| | || || || ||||| || | Sbjct 573 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 514 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | |||||| ||||||||||||||||| ||||| || || ||||| || | || || | Sbjct 513 TTAACGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 454 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 |||||| |||||||| | ||| || | | ||| || | ||||| |||| Sbjct 453 TTTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 403 >seq1396778 Length=4658 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | |||||||| |||||||| ||||| || |||||||| || ||| Sbjct 2570 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTTG 2629 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| | || || ||||| || |||||||| |||| || | ||||||| Sbjct 2630 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 2689 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||| |||| ||| Sbjct 2690 ATATGCTGTGGTCTTTC 2706 >seq1023260 Length=1473 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 ||||||| || || || | ||||| || || ||||| || ||||| || || | ||| | Sbjct 215 CTTCATCCCTGCTGATCAGCTCGTTTGAGAAAGTGAGTCCTGGCATGAGGCCTCTCTTCT 156 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || || || ||||| ||||| ||||||||||| || ||||| | Sbjct 155 TCAGCCAGAATATAGCAGCAAACGACCCAGAGAAGAAAATGCCTTCTACGGCAGCGAAGG 96 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 95 CCACCACTCTTTCCCC 80 >seq1424254 Length=5701 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 ||||||| |||||||| ||||||||||| ||||||| ||||||||| ||||| ||||| Sbjct 2307 ATATAACTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACA 2248 Query 76570 CATCAATGACCACTC 76584 |||||||||||| || Sbjct 2247 CATCAATGACCAGTC 2233 Score = 93.3 bits (102), Expect = 6e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 75986 GCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTA 76045 ||||| || || || || || || || || |||||||| ||||| || || | |||||| Sbjct 4924 GCTAGGTCACAGCTGGCTTCCAAAGCTCCATAATAAATAGTTTCAAAGATTTGCTTATTC 4865 Query 76046 AGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGT 76105 || || |||||| |||| ||||| ||||| | || || || ||||||||||| Sbjct 4864 AGTAACTGGGCTTCAGGACTCTCAAATGGATATCTCATCAGGATGAAAGCATCTGCTAGA 4805 Query 76106 CCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 76146 || || || ||||| ||||| || | ||| | ||||| || Sbjct 4804 CCTTGTACCCCAATTCCAATGGGCCGATGGCGTTTATTTGA 4764 >seq625382 Length=644 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || || || || |||| || Sbjct 455 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGATG 396 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| | || || || | |||||| | | Sbjct 395 GCATAGTCAGGGTGCTTCGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCAGT 336 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || || || |||| || ||||| || |||||||||| Sbjct 335 TCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCATGG 290 >seq856530 Length=1037 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||||| ||||||||| ||||| || ||| | Sbjct 190 TACCTCTTCTGCTGTCCAGAAAGATGCCTGTGCTTGTTTATACATTTTCCAGATGTCAGG 131 Query 47187 ATATTGGATCGGAAAAATAACAAA 47210 || ||||| ||||| || ||||| Sbjct 130 GTACTGGATTGGAAAGATGACAAA 107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 699904383144960