Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq91636 95.1 3e-14 seq856667 84.2 5e-11 seq14274 84.2 5e-11 >seq91636 Length=227 Score = 95.1 bits (104), Expect = 3e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||||| || || || || ||||| || ||||||||||| |||| | || Sbjct 192 CCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 133 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | ||| || Sbjct 132 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 73 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044 ||||| || || || ||| |||||| |||| | | |||| Sbjct 72 CTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTC 31 >seq856667 Length=1038 Score = 84.2 bits (92), Expect = 5e-11 Identities = 138/197 (70%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || |||||||| ||||||||||| || | || | ||||| || || || ||| Sbjct 954 GTGGACTCTTTCTGGATGTTGTAGTCCAACAGGGTGCAACCATCCTCCAGCGGCTTGCCG 895 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || |||||||||||| | | | | | |||||||| ||||| || || ||| Sbjct 894 GCAAACATCAGCCTCTGCTGGGCAGGTGGGTTGCCTTCCTTATCTTGGATCTTGACCTTG 835 Query 152028 ACAGTCTC--TACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 ||| |||| || || ||| || || ||||| || || || |||||| | || | Sbjct 834 ACATTCTCCATAGACTCACTG--GGCTGGACCTCAAGTGTGATGGTCTTGCCCATCAGGG 777 Query 152086 TCTTCACGAAGACCTGC 152102 ||||||| ||||| ||| Sbjct 776 TCTTCACAAAGACATGC 760 >seq14274 Length=203 Score = 84.2 bits (92), Expect = 5e-11 Identities = 140/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || || ||||| || |||||||||||||| | | ||| | ||||| Sbjct 6 GAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 65 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || || || ||||| |||| ||||||||| | | ||| || || || || Sbjct 66 TTCCAGCTGCTTGCCCGCAAAGATGAGCCGCTGCTGGTCGGGGGGGATGCCCTCTTTATC 125 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAAT 152068 || || || || || |||| | | |||| ||| ||| ||||| || || || Sbjct 126 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACTTCCAGGGTGAT 182 Query 152069 AGTTTTGCCCGTGAGAGTCTT 152089 || ||||| || || ||||| Sbjct 183 GGTCTTGCCGGTCAGGGTCTT 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1132205680735888