Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq91636 125 1e-23 seq14274 123 5e-23 seq1231921 116 8e-21 seq657585 98.7 2e-15 seq649457 95.1 2e-14 seq1351965 93.3 9e-14 seq856667 89.7 1e-12 >seq91636 Length=227 Score = 125 bits (138), Expect = 1e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 197 CCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 138 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| || || || || || |||||||||| | || |||||| || Sbjct 137 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 78 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| ||||||||||| || || | ||||| ||||| | ||||| Sbjct 77 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 18 Query 283053 TCGAGAGTGATCGTCTT 283069 || || ||||| ||||| Sbjct 17 TCCAGGGTGATGGTCTT 1 >seq14274 Length=203 Score = 123 bits (136), Expect = 5e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 ||||| || ||||| || | ||| || || ||||||||||| |||| ||| |||||| Sbjct 1 AGGCGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGG 60 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || || || || || |||||||| | || || ||||| || || ||||| Sbjct 61 CCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCGCTGCTGGTCGGGGGGGATGCCCTCT 120 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 || || |||||||| || || ||| | ||||| ||||| | || ||||| || ||| Sbjct 121 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTG 180 Query 283062 ATCGTCTTACCCGTCAAAGTCTT 283084 || ||||| || |||| ||||| Sbjct 181 ATGGTCTTGCCGGTCAGGGTCTT 203 >seq1231921 Length=2451 Score = 116 bits (128), Expect = 8e-21 Identities = 164/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 282874 CACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAA 282933 ||||||| ||| | || |||| || || ||| ||||| |||||||||||||| | | Sbjct 223 CACCACGAAGGTGGAGCTCCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCCGATA 282 Query 282934 GCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAA 282993 | ||| |||||||| || || || || |||| ||| | | || |||||| || | Sbjct 283 GGATGCAACCATCCTCCAGCTGCTTGCCAACAAATATC-AGCCCTGCTGGTCAGGTGGGA 341 Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 | || ||||| | ||||||||| || ||||| | | ||| ||||| | || || | Sbjct 342 TGCCTTCCTTATATTGGATCTTGGCCTTTACATTCTTGATGGTGTCACTGGGCTCAACCT 401 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 | ||| |||| ||||| || |||| ||||| || || |||||||| || Sbjct 402 CAAGACTGATGGTCTTGCCTGTCATGGTCTTCACAAAGATCTGCATATT 450 >seq657585 Length=689 Score = 98.7 bits (108), Expect = 2e-15 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 627 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 685 >seq649457 Length=677 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||| || ||||| ||| || ||||| ||||||||||| | | | Sbjct 617 CCACCCCTGAGGCAGAGGACCAGGCGTAGGATGGACTCTTTCTGGATGTTGTAATAGGGA 558 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||| || || || || || ||||||| | |||| ||||| || Sbjct 557 AGATTGTGGCCATCTTCCAGCTGCTTGCCCACAAAGATGAGCTGTTGATGGTCCGGAGGG 498 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| || || |||||||| || || || | ||||| ||||| | ||| ||| Sbjct 497 ATGCCCTCTTTATCCTGGATCTTGGCATTGACATTTTCGATGGTGTCACTGGGTTCTACT 438 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || |||| ||||| | ||| ||||| | ||| ||||||| Sbjct 437 TCTAGGATGATGGTCTTGCTGATCAGGGTCTTCATGAAGGTCTGCAT 391 >seq1351965 Length=3703 Score = 93.3 bits (102), Expect = 9e-14 Identities = 159/234 (68%), Gaps = 19/234 (8%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| ||||| | ||||| || | ||| ||||| |||||||||||||| | Sbjct 2191 CCGCCACGAAGGCGGGGCACCAGGTGCATGGTGAACTCTTTCTGGATGTTGTAGTCCGAT 2132 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||| | | |||||| || || || || ||||| |||| | || |||||| || Sbjct 2131 AGGGTGAGACTATCCTCCAGCTGCTTGCCAGCAAACATCAGCCTCTGCTGGTCAGGTGGG 2072 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| ||||||||||| || | |||| | ||||| Sbjct 2071 ATGCCTTCCTTATCTTGGATCTTGGCCT---------------TGTCACTGGGCTCGACC 2027 Query 283053 TCGAGAG----TGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || |||| |||| ||||| || |||| ||||| ||||| |||||||| || Sbjct 2026 TCAAGAGTGATTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATGTT 1973 >seq856667 Length=1038 Score = 89.7 bits (98), Expect = 1e-12 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 ||| |||| ||||| || || ||| ||||| |||||||||||||| || |||| Sbjct 974 AGGGGAAGCACCAG-TGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCAACAGGGTGCAA 916 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 |||||||| || | || |||||||| |||| | || ||| || || | || ||| Sbjct 915 CCATCCTCCAGCGGCTTGCCGGCAAACATCAGCCTCTGCTGGGCAGGTGGGTTGCCTTCC 856 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 || ||||||||||| | || || | || |||| || | | ||| || || ||| Sbjct 855 TTATCTTGGATCTTGACCTTGACATTCTCCATAGACTCACTGGGCTGGACCTCAAGTGTG 796 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| ||| ||| ||||| || || Sbjct 795 ATGGTCTTGCCCATCAGGGTCTTCACAAA 767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027130095495712