Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq14274 105 5e-18 seq91636 96.9 2e-15 >seq14274 Length=203 Score = 105 bits (116), Expect = 5e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| |||||| |||||||||||||| | || ||| | || ||| Sbjct 10 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 69 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | |||||||| || | || | || || || ||| Sbjct 70 AGCTGCTTGCCCGCAAAGATGAGCCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 129 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | |||| | |||||||| || ||||| |||| || || ||||| Sbjct 130 ATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTT 188 Query 44308 TCCCGTGAGGGTCTT 44322 || || |||||||| Sbjct 189 GCCGGTCAGGGTCTT 203 >seq91636 Length=227 Score = 96.9 bits (106), Expect = 2e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || |||||||| || ||| |||||| ||||||||||| || Sbjct 201 CATCCCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 142 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || |||||||||| | |||||| || | Sbjct 141 GGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 82 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| ||| | | ||| | |||||||| || | Sbjct 81 GGGGATGCCCTCCTTGTCCTGGATCTT-TGCCTTGACATTCTCGATGGTGTCACTGGGCT 23 Query 44286 CCACCTCCACCGTAATCGTCTT 44307 | ||||||| || || ||||| Sbjct 22 CGACCTCCAGGGTGATGGTCTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353575484468976