Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1406984 147 3e-30 seq1133617 120 4e-22 seq1337296 109 8e-19 seq1371912 91.5 2e-13 >seq1406984 Length=4975 Score = 147 bits (162), Expect = 3e-30 Identities = 204/286 (71%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || || || ||||| || || |||||| ||||||||||| | || | || | |||| Sbjct 1973 AAAGGGCAGCCCTTCACATTATTACAGATGAGAGACTGAATTGAGGCAGTGTTAATGATC 1914 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || ||||| || || || || ||||| |||||||||||| || || |||||| Sbjct 1913 TTAAAACCCACTTCCCCTCCAAAAGTGCTTGGCTTCCAGTACTGAGGAGAACAGATGGGA 1854 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | |||||| || ||||| | || | ||| |||| || ||| Sbjct 1853 TTACCCATAAGTCCTTTCAAGGAGAATGGCGCCCCAAGTTCTACCATGGTCTCCCCAAAG 1794 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 || || | ||||| ||||||||||||| | | | |||||||||| || |||| | Sbjct 1793 ATAGCATCAGGACGAGGCTTTTCCACCAGCAGGGCAGGATACAGCTCCATGGCATCGATG 1734 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | ||| ||||| | | || ||||| || || || ||||||| Sbjct 1733 TCACTGTAGAGGGCTTTCAACTCTGCAGCCATTTCTTTCTCTCCTG 1688 >seq1133617 Length=1896 Score = 120 bits (132), Expect = 4e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||| |||||| | || |||||| | ||| ||| | || Sbjct 1050 TCTTACCCCATGGCCCAGTCCTCGGGTGAAGCCAGGTCCTCGCTTCTGATCTGTCTTGAA 991 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || |||||||| | || | |||||||||||| Sbjct 990 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTCGAGCCCTGGGGATC 931 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 ||| |||| | |||| | |||| |||||||| ||| Sbjct 930 AGGAATGAACTTTCTCCTTAAAAGAACTTTTTCCAGAAC 892 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | |||||||| || || | || || || || || || | | Sbjct 357 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCCACAGGCGGAAGGGCTCTGGTG 298 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || || ||||| |||||||| ||||||||| || ||| | |||| | | ||||| | Sbjct 297 TAGTATGAGAGGTTGGAGAAGGCTTCCCAGTTTTTGTAACCATAGTGCACATTGTAAGTT 238 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTG 10058 || || ||||||||||||| |||||| ||| Sbjct 237 GGTGGACTGTCAATCAAATGTGATCTAGCTG 207 >seq1337296 Length=3481 Score = 109 bits (120), Expect = 8e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 |||| ||||| || || || || |||||||||||||| || | || || || ||| | Sbjct 2247 CGAAACCCACATCACCACCAAATGTGCTGGGCTTCCAATATTCTGGAGAACAAATGGGAT 2306 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 | | | ||| || || ||||| || |||||||| | ||| | || ||||| || || | Sbjct 2307 TTCCTAGGAGACCCTTAAGGGAAAAAGGAGCCCCAATCTCTATCATACTCTCCCCAAAAA 2366 Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 ||| |||||| || |||||||| || | || | || | ||| | ||| |||| || Sbjct 2367 TGGAGTTGGGCTGGCACTTTTCCAGCAGCAGCCCTGGATAGAACTCTAAAGCATCGATGT 2426 Query 8541 CTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | ||||| || || | || || || |||||||| ||||||| Sbjct 2427 CACCGTATAGCTCCTCCAACTCAGCGGCCATCTCCTTCTCTCCTG 2471 >seq1371912 Length=4063 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||||||||||||| || ||||| ||| ||| || || Sbjct 2994 TCACCTATAAGGATGAGACGAGTGGTCTGGAAGAGCTGCTCATCATCCCAGGTGGGGTGC 2935 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || | ||||| | |||||||| | ||| || |||| | |||||| |||| | | | Sbjct 2934 TCCTCCTTCAGCAAGTCGCACACGCGGTTATGCTCCCGCACCCAGATCGTGGAGAGGACC 2875 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 || ||||| |||| || ||||| | || || || ||||||| Sbjct 2874 ATCAGCCCGGGTAGCAAACCAAACACTTCCTGGCCCACAGCCA 2832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 703774729477120