Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq14274 134 3e-26 seq1357076 131 4e-25 seq91636 127 5e-24 seq649457 109 1e-18 seq1269963 86.0 1e-11 >seq14274 Length=203 Score = 134 bits (148), Expect = 3e-26 Identities = 149/197 (76%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 177936 AAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGA 177993 || || || || || || || |||||||| || ||||| || ||| |||||||||||| Sbjct 203 AAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGA--GCCCAGTGACACCATCGAGA 146 Query 177994 ACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCT 178053 |||| || ||||| ||||| ||||| || ||||| || |||||||| || || |||| Sbjct 145 ACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGACCAGCAGCGGCTCATCT 86 Query 178054 TCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAAT 178113 | || || || ||||| |||||||| | |||||| | ||||| ||| |||| || || | Sbjct 85 TTGCGGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAGGAGT 26 Query 178114 CAACACTGCATCTTGTT 178130 | || || || || ||| Sbjct 25 CCACCCTCCACCTGGTT 9 >seq1357076 Length=3788 Score = 131 bits (144), Expect = 4e-25 Identities = 164/222 (74%), Gaps = 10/222 (5%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| |||| || |||| ||| ||||||| ||||| | || || |||||||| |||| Sbjct 1638 AGGTCAAAAGGC---AAATCTTCATGAAAACCCTCACCAGCAAGACCATCACCCTAGAGG 1694 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| ||||||| ||||| ||||| ||||| |||||||||||||| | Sbjct 1695 TGGA--GCCCAGGGACACCATTGAGAATGTCAAGGTCAAGATGCAGGACAAAGAAGGCAC 1752 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || ||| ||| || | ||| ||||| || || || || | |||||||| ||||| Sbjct 1753 CCTTCC---CCAACAGCTACTCATCTTTGCTGGCAAGCAACGGGAAGATGGCCACACTCT 1809 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || |||| ||| |||| ||| | || || ||||| || || Sbjct 1810 TTCCAATTACAACATCCAGAAATATTCCACCCTGCACCTGGT 1851 >seq91636 Length=227 Score = 127 bits (140), Expect = 5e-24 Identities = 145/193 (75%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 177951 AAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGA 178008 || || |||||||| ||||| || || ||| ||||||||||||| ||||| ||||| Sbjct 1 AAGACCATCACCCTGGAGGTCGA--GCCCAGTGACACCATCGAGAATGTCAAGGCAAAGA 58 Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068 | |||||||| || || ||||| || |||||||| | || ||||| || || || |||| Sbjct 59 TCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGC 118 Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | |||||||| | || || |||| || ||| |||| || || || || ||||| || | Sbjct 119 TGGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGG 178 Query 178129 TTTTGAGACTCAG 178141 | || | ||||| Sbjct 179 TCCTGCGCCTCAG 191 >seq649457 Length=677 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||| |||| || || | | || || |||| ||| || || ||| | ||||||||| Sbjct 400 TTCATGAAGACCCTGATCAGCAAGACCATCATCCTAGAAGTAGAACCCAGTGACACCATC 459 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| ||||| ||||| || |||||||||||||| |||| || Sbjct 460 GAAAATGTCAATGCCAAGATCCAGGATAAAGAGGGCATCCCTCCGGACCATCAACAGCTC 519 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109 ||||| | || || ||||| |||||||| | |||| || |||| ||| |||| ||| Sbjct 520 ATCTTTGTGGGCAAGCAGCTGGAAGATGGCCACAATCTTCCCTATTACAACATCCAGAAA 579 Query 178110 GAATC 178114 || || Sbjct 580 GAGTC 584 >seq1269963 Length=2748 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 ||||||||||| || || | || ||||| ||||| ||| |||| ||| | |||| | Sbjct 647 ATTTTCGTGAAGACCCTTATGGGGAAAACTATCACACTCAAGGTTGAACCCCCAGATGCT 588 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || ||||| || || ||||| ||| || | |||||||| |||| | ||||| | Sbjct 587 ATAGAGAATGTAAAGGCCAAGATCCAGCACGAGGAAGGAATTTCTCCTGCTCAGCAGAGG 528 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 || |||| || || | || || ||||||||||| ||| | | | || ||| | ||| Sbjct 527 CTGCTCTTTGCTGGTGAGCATCTGGAAGATGGAAGTACTTTGTCTTACTACAACATTCAA 468 Query 178107 AA 178108 || Sbjct 467 AA 466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181181083508832