Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value SEQ32083 89.7 5e-13 SEQ18817 89.7 5e-13 >SEQ32083 Length=112626 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 ||||||||||| ||||| || |||||||| || | || ||||| ||| || ||||| Sbjct 102559 TCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCGGGCATCAGTCCCCGCTTCTTG 102618 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || || ||||| || || || || | |||||| || Sbjct 102619 AGCCAGAATATCGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACCGCTGCAAAGGC 102677 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || ||||| || | |||||||||||| ||||||||||| || ||||| || ||| Sbjct 103730 ATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTGA 103789 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCC 16588 || |||||||| || || ||||| | | ||| ||||| | |||||| ||| || Sbjct 103790 AAGCCATAGAAACAACGGGCCTCTGTGACTTGAACTTCTTGGCTAAATCGCTCCACC 103846 >SEQ18817 Length=114269 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| || |||||||| || || || ||||| || | || ||||| |||| |||| Sbjct 113859 CTTCATCCCTGCTGATCAGCTCATTTGAAAAGGTAAGTCCAGGCATGAGGCCTCTCTTCT 113918 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| ||||||||||| || || ||||| || || || |||| ||||| | Sbjct 113919 TTAGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 113978 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 113979 CCACCACTCTTTCC 113992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510797973045640