Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1629 208 5e-49 SEQ48849 140 2e-28 SEQ42702 129 4e-25 SEQ28171 84.2 2e-11 >seq1629 Length=106482 Score = 208 bits (230), Expect = 5e-49 Identities = 321/454 (71%), Gaps = 12/454 (3%) Strand=Plus/Minus Query 3978 CTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAAC 4037 ||| ||||| ||||||||||| |||| ||| || || || || | | |||||| || Sbjct 69982 CTTTTCATAGACTTCAAATTTATACTCAATGTCCTTTTCCTCCTGGGCCTCAGAAAGGAC 69923 Query 4038 ACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTC 4097 || ||| ||| | | |||||| ||| || | | || || ||||| | | | || Sbjct 69922 ACCTGGGGATTGCAGGAGAAGTTTATATCTCCCCAAATAAATTTCTGAGAGACCTGAGTT 69863 Query 4098 ACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCAT 4157 | ||| || ||||| ||||| |||||| || | || | || ||| | |||| Sbjct 69862 GCCTTCTGTTTCCTGCATAATCCTTGTCACA----GTCTGAGGTGGCCTGGCCGATTCAT 69807 Query 4158 AGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAA 4217 || || | || |||||| | |||| | | |||| || ||||||||||||||| |||| Sbjct 69806 CCCTCCTCTGTAAACAGAAGTGCCTCTGACTGTCCAAAC-ATGTCTACTTTATTTTCTAA 69748 Query 4218 TTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCT 4277 |||||| |||| |||||||||| ||| ||| ||| || || | ||| |||||| Sbjct 69747 TTCTGGTTGTTTAATAAGTTTTAAGGCACTGTCTGGACTTTTGGCAAGGAAACGAGCTCC 69688 Query 4278 ATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCG 4337 ||||| | ||||| ||| | ||| ||| | ||||||| ||| ||||||| Sbjct 69687 TTGTGGTGGTTCCTTGAGTAC-----TGAAAACTATGCTAATTCTCCCTCTTAAAGGTTC 69633 Query 4338 GTTCTTCTCAGGAATTGAGAACCAAGTCTTTTT-ACCCATAATCACTAAATTCTGTTTAT 4396 |||||||||||||| |||||| |||||||| |||||||||||| | | |||| || Sbjct 69632 ATTCTTCTCAGGAATGGAGAAC-AAGTCTTTCCCACCCATAATCACCAGGTCCTGTGTAC 69574 Query 4397 CTGGTACAGAAGATGTAGTAGTCATTCTTTGGAA 4430 || || ||||| || || |||||||||||||| Sbjct 69573 CTTCCACTGAAGAGGTTGTGGTCATTCTTTGGAA 69540 >SEQ48849 Length=113598 Score = 140 bits (154), Expect = 2e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 26963 AACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAATTAGGGCAGGG 27022 |||||| |||||||| ||| ||| |||||||| || |||| || ||| || || Sbjct 28446 AACGCAGGTGCAGCCCACACCCACGAGCATCTTATCCAGCCGGAAGGAAAAGGGACACTT 28505 Query 27023 TTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAGTTCATGTGGTA 27082 | | || | | |||| || || |||||||| ||||| |||| ||||||||||||| Sbjct 28506 CTCAGGCTCCCTCCGCAGGACCAGGATCTCTTGCTGGATGAGGACAGAGTTCATGTGGTG 28565 Query 27083 GTCTACATTCCCATCAGCATTAACACATC-CTAAGTAGCGACACTTTGCTTCCCAAATCA 27141 ||| | ||||| || ||||| ||||| | || | | ||| |||| ||| ||||| |||| Sbjct 28566 GTCCAGCTTCCCCTCTGCATTGACACAGCGCTGA-TGGCGGCACTGTGCCTCCCAGATCA 28624 Query 27142 CAGAGGGATATCTATCTTGATCTTCATTGCG 27172 |||||||||||||||| | || |||||||| Sbjct 28625 CAGAGGGATATCTATCAGGGTCCTCATTGCG 28655 >SEQ42702 Length=42628 Score = 129 bits (142), Expect = 4e-25 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 || || |||||||| || || | |||||| | |||||||||| |||||||||| |||||| Sbjct 37106 TTGTAAACAGAACTGCCCCCGACTATCCAAATCATGTCTACTGTATTTGCTAACTCTGGC 37047 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283 ||||| ||||||||||||||||||| | ||| ||||| | ||||||||||| ||||| Sbjct 37046 TGTTCAATAAGTTTTAAAGCATCATCCAGACTTTTAGCAAGAAAATGAGCTCCTTGTGG 36988 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || ||||||||||| Sbjct 29166 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 29107 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| || ||| ||||||| ||||| | |||||||||| || Sbjct 29106 AATGGAGAACCAGGTTTTTCTACCCATTATCACCAGATTCTGTTTACCT 29058 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| | | ||||| |||||||||||| ||||||| |||||| || ||||| Sbjct 39692 AAGTTTATATTTTCCCAAATCAATTTCTGGAAAAAACGTGTCACTTTCAAATTCCTGCAT 39633 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTC 4163 |||||| |||||||| ||| | |||| || ||| | | |||| ||||| Sbjct 39632 GATCCTTGTCACAAAGAGTCTGAGATGGCCTGGCTGATTCATGGCTTC 39585 >SEQ28171 Length=118966 Score = 84.2 bits (92), Expect = 2e-11 Identities = 193/282 (68%), Gaps = 9/282 (3%) Strand=Plus/Plus Query 101534 TAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGTC 101592 ||||||||||| | ||||||||| | |||||||| ||||| ||| ||| | || ||| Sbjct 106334 TAAACAGCCATTTCCATTTTAATCACTGGGTGTGGATTATACCCTTC-AATCTGAAAGTC 106392 Query 101593 ATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGG 101652 || |||| || |||||||| ||| |||| | ||| || |||| || || Sbjct 106393 TTCAACTTTGAAATCATCAATTGTCTCAACTTTTCAGAGGATTCTGAGCTTTGGGAAAGG 106452 Query 101653 TCTAGGAGTTCGC-GTCAA-CTGCATTTTAAGAGCATCAATGTGA-TCTACATAGATGTG 101709 ||| ||||| | | || ||| ||||| || | || || || || || | |||| Sbjct 106453 TCT--TAGTTCTCACTGAAGCTGAATTTTCAGTGGCTCGATACGATTCAGCAAATATGT- 106509 Query 101710 AGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCAT 101769 |||||||| | |||||||| ||| || || ||| || | |||| || ||| |||| Sbjct 106510 -GCATCTCCCAAAGTATGGACAAAATCACCTGGCTGCAGGTCCGTGATGTGTGCAGTCAT 106568 Query 101770 GCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 | | || | || ||||| || ||||| || ||||| || Sbjct 106569 GTAGGTGAGCAGGCCGTAGCTGGCCATGTTGAAGGGCACACC 106610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360826656122177