Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value SEQ81609 125 8e-24 SEQ32083 120 4e-22 SEQ18817 111 2e-19 SEQ13259 107 2e-18 >SEQ81609 Length=287 Score = 125 bits (138), Expect = 8e-24 Identities = 195/274 (71%), Gaps = 5/274 (2%) Strand=Plus/Minus Query 24383 TTTTTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 24442 |||||| || ||||| ||||| ||||| |||||||| |||| |||| |||||| Sbjct 284 TTTTTCGTTTTCGTCTTTTACATAAGTATCTATCAAAAGCGAATACGTTTCACTATGAAT 225 Query 24443 GTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTAT 24502 ||||| || ||||| || || |||||| || |||| |||| | || ||||| | Sbjct 224 ATTTTCCATCATGATTTGGAAACCATAGAAAAATTTAGCTTCGGCATATTGCACTTCATT 165 Query 24503 A-CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 24561 | |||||| | | || | ||||||||| || |||||||| ||||| ||||| || | Sbjct 164 AACAAAATTCT-CAGCAAGATTTTCATTAACGATTCCGTCTGAAGCTGCGAAAAAGGCAA 106 Query 24562 ATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGT--TTATTCCAATCATTGATAT 24618 | |||||||||||| || || || | | | | | |||||||| ||||| | || Sbjct 105 GAATATGTTTTATAAAGTAACGCTCATCATCATTTAACTTATTATTCCAGTCATTTAAAT 46 Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAA 24652 ||| || | || | |||||| |||||||||| Sbjct 45 CTTGTGACAAGTCAATTTCTTCAGCTGTCCAAAA 12 >SEQ32083 Length=112626 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| ||||| | || ||||||||||| || |||||||| || || ||||| | Sbjct 102557 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCGGGCATCAGTCCCCGCTTCT 102616 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||| ||||| |||||||| || || ||||||| Sbjct 102617 TGAGCCAGAATATCGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACCGCTGCAAAGG 102676 Query 24277 C 24277 | Sbjct 102677 C 102677 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/145 (74%), Gaps = 5/145 (3%) Strand=Plus/Plus Query 23783 GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA----GACATAACTC 23838 |||| ||| |||||| |||| || | |||| ||| ||| |||| ||||| || | Sbjct 100932 GTTTACTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTTGACATCACAC 100990 Query 23839 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATA 23898 |||| | ||||| || || || || || || || || || || || ||||||| ||| | Sbjct 100991 CCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAA 101050 Query 23899 TATTTTCCATGAAATCGGATGGATT 23923 ||||||||||||| || ||||||| Sbjct 101051 TATTTTCCATGAAGTCAAATGGATT 101075 >SEQ18817 Length=114269 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || || || || || | || || ||||| || ||||| ||||| ||||| | ||| || Sbjct 113861 TCATCCCTGCTGATCAGCTCATTTGAAAAGGTAAGTCCAGGCATGAGGCCTCTCTTCTTT 113920 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| ||||| | |||||||||||||| ||||||||||||||||| || |||||||| Sbjct 113921 AGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 113980 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 113981 ACCACTCTTTCCCC 113994 >SEQ13259 Length=38172 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 ||||| ||||||| || || || || | || || || || |||||||||||||| | Sbjct 18351 GATCCCTCATATGTTTCATAGGGGCCATACTCCTTGGCGAGGTCACAACTCGCCTCCAGG 18292 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500 || ||||||||||| ||||| ||||||| |||||| || || ||||| |||| ||| Sbjct 18291 GCTCCGTAATAAATCGTTTCAAAGATCTGCTTATTCAGCAACTGGGCTTCGGGGCTCTCA 18232 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 || || || | | | || || || ||||||| ||||| || ||||| || || || Sbjct 18231 AAGGGGTACCTCATCAAGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGC 18172 Query 53561 CTATGTCTCTTATTAGA 53577 | || | ||||| || Sbjct 18171 CGGTGGCGTTTATTTGA 18155 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || || |||||||| ||||| ||||| |||||||| || ||||| || || || || | Sbjct 21442 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTCGTGTAAGGCTCAATG 21383 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||| || || |||| || ||||||||||| ||||| ||||| || || | | ||| Sbjct 21382 GACTCGTTGTTCCCCAGGATCTGAGCAGTTGAGGCAGTGGGCATCGGGGCAATAAGTAAG 21323 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 21322 CTGTTTCTTATACCATA 21306 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || || |||||||| || |||||| || | || || || |||||||| | Sbjct 24150 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCGTAGTTAGGCTCAGCAATATGGATGT 24091 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||| || ||||||||||| || || || || || || ||||| || | | |||| Sbjct 24090 TGAGAGACTGGCTTTGATCGATAAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTCT 24031 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | ||| ||||| | | |||| | || || |||| Sbjct 24030 TCTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 23980 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | || || Sbjct 15334 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 15275 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 ||||| || || ||||| ||||| || | || |||||| | | || || | ||||| Sbjct 15274 CTGTTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 15215 Query 54145 CGGTTCCAAGTATATGG 54161 || |||| ||| |||| Sbjct 15214 AGGCTCCAGGTAAATGG 15198 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || || | || || || | Sbjct 3729 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCGTGCTGCCAGGA 3670 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | || || | || || || | ||||| | ||| ||||||| Sbjct 3669 TGGCATAGTCAGGGTGCTTCGTGGTTAAGGTTGCCGCCGTCTCGGCAGCCAGGGTGTCCA 3610 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 || || || || ||||| |||| | |||||||| || ||||| Sbjct 3609 GCTCCACTGTGGTCACTCCGCTATACAGGCCTTGGATTACTTTCAT 3564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593005965090960