Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value SEQ45570 250 3e-61 SEQ29753 131 2e-25 SEQ11400 105 8e-18 SEQ10732 104 3e-17 SEQ39720 93.3 5e-14 >SEQ45570 Length=39334 Score = 250 bits (276), Expect = 3e-61 Identities = 269/356 (76%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 83038 GCCGCGCGCTGGCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCA 83097 ||||| || || ||| ||||| || || |||||||| || | | | | ||| || | Sbjct 34413 GCCGCCCGTCTGCTGGGACAGCAGCGCTTCTATGTCGGGTTCGATGTCGATGGTGCGGAA 34354 Query 83098 GCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTT 83157 |||| |||||||||||||||| || ||||| ||||||||||||||||||||||| Sbjct 34353 GCGGCGGCTGTACCTGCGCACCGGGACTCCGTCGCGGCCCACCAAGAACTTCTCGAAGTT 34294 Query 83158 CCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAG 83217 |||||| | ||||||||||||||| || |||||| ||| || ||||||| ||| ||| Sbjct 34293 CCAGGCAATGTCGTTGCGGCACACCGGGGACCAGATGATGTACTTGGGGTCGGTCATGAG 34234 Query 83218 CGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATG 83277 || | ||||||||| |||||||||| |||||| || ||||||| ||||||||| || Sbjct 34233 CGCAGTGGGGTCGTCGCTGGGCGCCGGCAAGGCCTCCCGCAGGAAGGTGAAGAGCGGGTG 34174 Query 83278 TGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTT 83337 ||| | ||||||| || ||||||||||| || | | ||||| |||||||| || Sbjct 34173 CGCCTTCTCACCGTTCACTTCGCACTTCTCAAACAATGTGAAGTTGGGCTCGAACCCACC 34114 Query 83338 CCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 || || ||||| | ||| |||| ||| ||||| | |||| ||| || |||| Sbjct 34113 ACCCGGTCGGACATACTTGAGGGTGTTCAAAATCTCTTCGTTCTTGGCATTCTCCT 34058 Score = 178 bits (196), Expect = 2e-39 Identities = 189/248 (76%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||| |||||||| || ||||| | ||| || |||| || |||| Sbjct 33878 CCTGATGTCCGAACTGGTTGCACGGGAAACCGAGCACCATCAGGCCGCGAGGCCCCAGGC 33819 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | |||||| |||||||||| ||||| |||||| ||| | ||||||||||| || | Sbjct 33818 GTCTCTGCAGGTCGTTCATCTCGGTGTAGTCCCGGGTGGTGGTGCCTCAGAGGGAGGCGA 33759 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||||||||||| ||| |||||| | | |||| | |||||| || || || || | Sbjct 33758 CGTTCTCGATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACGGGCTCCCCGCCCG 33699 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCT---CTGCCGCGGCAAGCTGTG 83627 | |||||| || ||||||||| |||| | ||| || | ||||||| ||| | | Sbjct 33698 CCAGCGGGCGCGCGGAGAAGGCGAACACGG---TGGACTGCGCCGCCGCGGAGAGCCGAG 33642 Query 83628 CCGCGTAC 83635 ||||| || Sbjct 33641 CCGCGCAC 33634 >SEQ29753 Length=66751 Score = 131 bits (144), Expect = 2e-25 Identities = 238/341 (70%), Gaps = 17/341 (5%) Strand=Plus/Plus Query 83063 GCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGC 83122 |||| |||||||||||| | | | ||| ||| || | ||||||| | ||| | |||| Sbjct 29566 GCCT-GATGTCGGGCTCGATGTTGATGGTTTGGAAGGTGCGGCTGTAGCGGCGGAAGGGC 29624 Query 83123 GTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACT 83182 || || | || | || ||||||||| |||||||||| |||||| ||||| ||| Sbjct 29625 TCCCCCTCTGGCCCTATCAGGAACTTCTCAAAGTTCCAGGACACGTCCGAGCGGCGCACG 29684 Query 83183 GGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCC 83242 ||| |||||| ||||| | ||| ||| ||| ||| | | ||||||| |||| Sbjct 29685 GGACTCCAGGCGATGAGTTTGGGATCGGTCATGAGGGAGAATGGGTCGTCG-TAGG---- 29739 Query 83243 GGCAGGGCCTCTCGT-----AGGAAGGCGAAGAGCGGATGTGCCCT-TGCACCGTTGACC 83296 || ||||| || || ||| |||| |||| || || | | ||| ||||||||| Sbjct 29740 GGTAGGGCAGCTTGTCTTTCAGGTAGGCAAAGACAGGGTGCTCGTTCTGC-CCGTTGACC 29798 Query 83297 TCGCACTTCTCG--AAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCT 83354 || ||||| | | ||||| | ||| | |||| | |||| |||||| ||||||| || Sbjct 29799 TCACACTTTTGGGTAAGAG--TGAAGGTGGGCTGGTAGCCACGCCCAGGGCGGACGTACT 29856 Query 83355 TCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGG 83395 | ||| || |||||| ||||||| ||| |||||| Sbjct 29857 TGAGGCTGTTCAGGATCTCCTCATTCTGACAGTTCTCCTGG 29897 >SEQ11400 Length=51631 Score = 105 bits (116), Expect = 8e-18 Identities = 185/264 (70%), Gaps = 4/264 (2%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| || |||||| || || ||| Sbjct 24581 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATTGGCAACTTTGCCTCCCGCCTGC 24639 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 24640 TGGTGCACCTGTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 24699 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 |||||| |||||||| |||| || ||||| ||| | | || |||| ||||| Sbjct 24700 GCGGCTCGCTGGGCAAGAAGCAG-CTGGACCCCGCCCGCATCAGGCTGATCCGCCACTAC 24758 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| |||| ||||| || ||||| ||||| |||| ||||| ||| Sbjct 24759 GTGCAGCTGCTCTACCCGCGAGCCAAGAACGACCGCGTCTGGACTCTGGAGTTCGTGGGC 24818 Query 50648 TGCCTGGACGAGCGCTGCCGGCGC 50671 |||||||||||||| |||||| Sbjct 24819 AAGCTGGACGAGCGCTGTCGGCGC 24842 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 49919 TCCTCTCCCGGGGAGCTGGCGGTGCTCCTACTGCACAAGGTCTTCCAGGAGCTCTTTGAC 49978 |||||||| |||||| | |||||| |||| |||||| | |||||| |||||| |||||| Sbjct 24120 TCCTCTCCGGGGGAGTTTGCGGTGTTCCTCCTGCACCGGCTCTTCCCGGAGCTGTTTGAC 24179 Query 49979 GCGCGCCAGCTGCGCC-GCTGCTACAGCTGCTACGGCGACGGGCGCACGCATTGTCTGGA 50037 ||| ||||| || || | ||||||||||| ||||| || ||| ||| ||||| Sbjct 24180 CACCGCAAGCTGGGCGAGCAG-TACAGCTGCTATGGCGATGGTGGCAAGCAGGAGCTGGA 24238 Query 50038 CCCTGCGCGCCTGCAACTGATCCG 50061 || | | ||||| | ||||| Sbjct 24239 TCCCCAGAGGCTGCAGATCATCCG 24262 >SEQ10732 Length=125027 Score = 104 bits (114), Expect = 3e-17 Identities = 139/188 (74%), Gaps = 9/188 (5%) Strand=Plus/Plus Query 83098 GCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTT 83157 |||| |||||||||||||||| | | || || |||||| ||||||||| ||||| Sbjct 119794 GCGGCGGCTGTACCTGCGCACTGAACA-CTGT-AGGTGCCACCAGGAACTTCTCAAAGTT 119851 Query 83158 CCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGC-TGGGGGTCGCTCACGA 83216 |||||| | ||| ||||||||||| ||||| | ||| || |||||||| | || Sbjct 119852 CCAGGCAATGTCATTGCGGCACACCAGAGACTAAATGATGTGCTTGGGGGTCAGCCCTGA 119911 Query 83217 GC---GTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCG 83273 || |||| |||||| ||||||||||||| | ||| | ||||||| ||||||| Sbjct 119912 GCTCAGTGC---GGTCGTCACTAGGCGCCGGCAAGCCCTACCCCAGGAAGGTAAAGAGCG 119968 Query 83274 GATGTGCC 83281 | || ||| Sbjct 119969 GGTGAGCC 119976 >SEQ39720 Length=116558 Score = 93.3 bits (102), Expect = 5e-14 Identities = 221/333 (66%), Gaps = 7/333 (2%) Strand=Plus/Plus Query 83104 GCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGC 83163 ||| ||||||| | | || || || | || | || ||| ||||| ||| | ||||| Sbjct 36095 GCTCTACCTGCCCGCTGGAACACCATCCGGGCCAAGCAGGAA-TTCTCAAAGCTTCAGGC 36153 Query 83164 CACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCT 83223 || ||| |||||||||||||||||||| || || |||| ||||| |||| | Sbjct 36154 CATGTCATTGCGGCACACTGGAGACCAAATGCTGTACTTAGGGTTGCTCATGAGCACAGT 36213 Query 83224 CATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT 83283 || ||| | ||||| |||| |||||| | || ||| || | || ||| | Sbjct 36214 GGGGTTGTCACCCGGCGCTGGCAAGGCCTCCCAAAG------GAAACGCCGTTGAGCCTT 36267 Query 83284 TGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGG 83343 |||| || || || || ||||| || | | ||||| || | ||| || || || Sbjct 36268 CTCACCATTTACTTCACAGTTCTCAAACAATGTCAAGTTGGGTTGGAACCCACCACCTGG 36327 Query 83344 ACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAA 83403 | | | ||| |||||| || ||||| | || | ||| || ||||| || ||||| Sbjct 36328 TCAGTTATACTTGAGGGAATTCAGAATCTCTTCTTTATTGGCATTCTCCTGCTGTCCGAA 36387 Query 83404 CTGGTTACACGGGAACCCAAGCACTACCAGCCC 83436 ||| || || ||||| | || || | ||| || Sbjct 36388 CTGATTGCATGGGAAACTGAGTACCATCAGGCC 36420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608062994387080