Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value SEQ43829 143 2e-29 SEQ23565 134 1e-26 seq7114 107 2e-18 SEQ23137 84.2 2e-11 SEQ37766 82.4 6e-11 SEQ17007 82.4 6e-11 SEQ11330 82.4 6e-11 seq9926 82.4 6e-11 seq6726 82.4 6e-11 >SEQ43829 Length=74093 Score = 143 bits (158), Expect = 2e-29 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || |||||||| || ||||| ||||| | || Sbjct 42270 CCCCTC--AGGCGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACA 42213 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 |||| || | || |||||||| ||||| ||| | || || ||||||||||| ||| | Sbjct 42212 GGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAA 42153 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||||| |||||| ||||| | | | || |||| ||||||| | Sbjct 42152 TACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCT 42093 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||| ||| |||||||||||||| | || || || || ||||||||||||| Sbjct 42092 CCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTGA 42042 Score = 125 bits (138), Expect = 6e-24 Identities = 164/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || |||||||| || ||||| ||||| | || Sbjct 42498 CCCCTC--AGGCGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACA 42441 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 |||| || | || |||||||| ||||| ||| | || || ||||||||||| ||| | Sbjct 42440 GGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAA 42381 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||||| |||||| ||||| | | | || |||| |||||| | Sbjct 42380 TACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCT 42321 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||||||||| | || || || || || ||||| Sbjct 42320 CCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 42275 >SEQ23565 Length=11847 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||||||||| || || ||||| ||||| | |||||| || | || Sbjct 9292 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 9351 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||||||| | || || ||||||||||| ||| | |||||||||||| Sbjct 9352 TCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 9411 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | | | || |||| |||||| |||| ||| |||||| Sbjct 9412 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 9471 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 9472 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9503 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||||||||| || || ||||| ||||| | |||||| || | || Sbjct 9520 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 9579 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||||||| | || || ||||||||||| ||| | |||||||||||| Sbjct 9580 TCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 9639 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | | | || |||| |||||| |||| ||| |||||| Sbjct 9640 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 9699 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 9700 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9731 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||||||||| || || ||||| ||||| | |||||| || | || Sbjct 9748 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 9807 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||||||| | || || ||||||||||| ||| | |||||||||||| Sbjct 9808 TCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 9867 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | | | || |||| |||||| || | ||| ||||| Sbjct 9868 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTT 9927 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || || ||||| ||||| || || || |||||| Sbjct 9928 TTACCAGTTAAGGTTTTCACGAAGATCTGCATT 9960 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| || | ||||||||| || || ||||| ||||| | |||||| || | || Sbjct 9064 AGGACCAGGTGTAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 9123 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||||||| | || || ||||||||||| ||| | |||||||||||| Sbjct 9124 TCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 9183 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | | | || |||| |||||| |||| ||| |||||| Sbjct 9184 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 9243 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 9244 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9275 >seq7114 Length=58683 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 20952 CCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGG 21011 ||| |||| || |||||||| | || ||||||||| || | ||||| ||||| | || Sbjct 885 CCTTGCAGGCTCAGCACCATGTACAGAGTGGACTCTTTCTTGATGTTGTAGTCAGACAAA 944 Query 21012 GTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACG 21071 | ||| | |||||||||| ||||| || | || || |||| |||||| || | | Sbjct 945 ATGTGGCCATCCTCCAGCTTCTTGCCAGCGAATATCAGCCTCTTCTGGTCAGGTGGGATG 1004 Query 21072 CCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGA--CAGTATCACCGGGCTC--CGT 21127 ||||||||||| |||||| || || | || || |||| |||||| | | Sbjct 1005 CCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTTGATGGTGTGTCACTGGGCTCGACCT 1064 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 ||| | || ||||||||||| || | ||||| ||||| || ||||| ||| Sbjct 1065 TTCAAGAGTGATGGTCTTGCCTGTCAGGGTTTTTACAAAGATCTGCATGTTG 1116 >SEQ23137 Length=3047 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | ||| | ||| | || ||||||||||||||||| ||||| | | Sbjct 20 CCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 79 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || | || |||||||| || || ||| | || ||||||||||| || || Sbjct 80 AAAGTAGGGCCATCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGA 139 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| || || | | | ||| || ||| || Sbjct 140 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACC 199 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || |||||||| || || | || || ||||| || ||||| ||| Sbjct 200 TCGAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTTG 250 >SEQ37766 Length=173039 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/235 (68%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || ||||| | ||| | || ||||||||||||||||| ||||| | | Sbjct 157072 CCACCACGGAGTCTTAGCACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 157131 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGC----ATAAATAAGTCTCTGCTGGTCCAC 21064 | || ||| | || |||||||| || || || || | | ||||||||||| || Sbjct 157132 AAAGTATGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCAGTCTCTGCTGATCAGG 157191 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | |||||||| || |||| || | || || | | | ||| || ||| || Sbjct 157192 AGGAATTCCTTCCTTATCCTGGATC-TTGGCTTTACATTTTCTATAGTGTCCGAGGGTTC 157250 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || |||||||| || || | || || ||||| || ||||| ||| Sbjct 157251 AACCTCGAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTTG 157305 >SEQ17007 Length=364713 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20952 CCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGG 21011 || ||||| | ||||||| || |||||||| || || || || ||||| | |||| Sbjct 137646 CCACGCAGGCGCAGCACCAAGGGCGGGGTGGACTCTTTCTGGATATTGTAGTCAGACAGG 137587 Query 21012 GTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACG 21071 || || | ||||||||||| ||||| || || || ||||||||||| || | | Sbjct 137586 GTGCGGCCATCCTCCAGCTGCTTGCCAGCGAGTATCAGCCTCTGCTGGTCAGGTGGGATG 137527 Query 21072 CCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCC 21131 ||||||| ||| |||||| || |||| ||| || |||| ||| || || Sbjct 137526 CCTTCCTCGTCTTTGATCTTGGCCTTGACCTTCTCGATGGTGTCACTGGGTTCGTCCTCA 137467 Query 21132 ACGGTAATGGTCTTGCCGGTTAA 21154 | || ||| ||||||| || || Sbjct 137466 AGAGTGATGCTCTTGCCTGTCAA 137444 >SEQ11330 Length=6390 Score = 82.4 bits (90), Expect = 6e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 21000 TAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGG 21059 ||||| | |||||| || | ||||||||||| ||||| || | || || ||||||||| Sbjct 6124 TAGTCAGACAGGGTCCGGCCATCCTCCAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGG 6065 Query 21060 TCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCG 21119 || || | |||||||| ||| |||||| || || | ||| || |||| | Sbjct 6064 TCAGGTGGGATGCCTTCCTCGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTG 6005 Query 21120 GGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 ||||| || | || ||||||||||| || | || || || || || ||||| ||| Sbjct 6004 GGCTCAACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTTG 5945 >seq9926 Length=86336 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/216 (68%), Gaps = 14/216 (6%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||||| |||||| || |||||||| ||||| | |||||| || | ||| Sbjct 54104 AGCACCAGATGCAAGACGGACTCTTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCC 54045 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| | || ||||||||||| || | |||||||||||| Sbjct 54044 TCCAGCTGCTGGC--------------CTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 53999 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | |||| |||||| || | ||||||||| Sbjct 53998 TGGATCTTGGTCTTGACATTCTTGGTCTTGTCACGGGGCTCGACCTCAAGAGTAATGGTC 53939 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 ||||| ||| || || || ||||| ||||| ||| Sbjct 53938 TTGCCCATTAGGGTCTTCACGAATATCTGCATGTTG 53903 >seq6726 Length=145916 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 20952 CCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGG 21011 || ||||| | ||||||| |||| |||||||| || || ||||| ||| | | |||| Sbjct 106656 CCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGCCAGACAGG 106597 Query 21012 GTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 || || ||||||||||||| ||||| || | | || ||||||||||| Sbjct 106596 GTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAATAGCAGCCTCTGCTGGTC 106547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421762959272732